Pseudomonas aeruginosa Carb01 63, YQ19_RS11305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.25.40.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | IPR018392 | LysM domain | 175 | 229 | 3.23679E-6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 372 | 445 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | IPR036779 | LysM domain superfamily | 163 | 238 | 1.6E-10 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 237 | 259 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 237 | 313 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 411 | 445 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 788 | 816 | - |
| Coils | Coil | Coil | - | - | 319 | 367 | - |
| SMART | SM00257 | LysM_2 | IPR018392 | LysM domain | 175 | 230 | 0.0037 |
| PANTHER | PTHR18898 | NUCLEOPROTEIN TPR-RELATED | - | - | 323 | 898 | 1.0E-8 |
| NCBIfam | TIGR03504 | JCVI: FimV/HubP C-terminal domain | IPR020011 | Motility protein FimV, C-terminal | 875 | 918 | 6.6E-21 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 269 | 283 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 140 | 177 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | IPR011990 | Tetratricopeptide-like helical domain superfamily | 547 | 626 | 3.9E-6 |
| NCBIfam | TIGR03505 | JCVI: FimV/HubP N-terminal domain | IPR020012 | Motility protein FimV, N-terminal | 182 | 254 | 4.0E-30 |
| Gene3D | G3DSA:1.20.58.2200 | - | IPR038440 | FimV, C-terminal domain superfamily | 858 | 919 | 1.9E-27 |
| Coils | Coil | Coil | - | - | 904 | 919 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 380 | 394 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.