Pseudomonas aeruginosa FRD1, UC33_RS21625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain FRD1 contig_10_scaffold04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTCAGACTATCCGACTTCAAGCCGGCCACCCGCATTTGAACGACGGTTCGCCCCCATTGGGGGAATACCGGCTGAGGGAGAGGTCACGCATACGGTGG AAAGGTGAGCTTGTACCGGCTGTGCTTGGTGAACGTTTGGACAATCAGACTACGCGTGCTGAAGCGTTGTTTGGATAGGGGCAGAGGCAGAAAATACTCC GACCATTCAGCCTCACAATCCAAAAGCCATTGTGCAACTTTTTGGTGGATAAAGCTGTGGATAGAACGCTAGGGAACAAACACCCAAAGGGCTCCGAGAG AATGCGCAACTTTTTGCAAGAAGTGTGCAAAAAGTTGCACAATTTTCAGTGTTCTTCCCATGAGAATCGCCAGCGAATTTTTGGCTTCCCCCAATAACGC CTTGATGGAAAAGAGTTTCAAGACTAGTGGCACGGTTCTTGTCTAGCACCGATGCCCCCGGCATATCGCCTGGGCACTTTCAACGACAAGGAACGTATCC
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| DNA Sequence for Gene |
>UC33_RS21625
ATGGCAACCCCCGCCTACATGTCCATCACCGGCACCAAGCAGGGCCTGATCACCGCCGGCGCCTTCACCGAGGATTCGGTCGGCAACACCTACCAGGAAG GCCACGAAGACCAGGTGATGGTCCAGGGCTTCAACCACGAAGTGATCATCCCGCGCGACCCGCAGTCCGGCCAGCCGACCGGCCAGCGCGTGCACAAGCC GGTGGTCATCACCAAGGTCTTCGACAAGGCCTCGCCGCTGCTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGACCAAGGTCGAGATCCAGTGGTACCGC ACCTCCGCCGCCGGCACCCAGGAGCACTACTACACCACCGTCCTGGAAGACGCGATCATCGTCGACATCAAGGACTACATGCACAACTGCCAGGACCCGG GCAACGCCCACTTCACCCACCTGGAAGACGTGCACTTCACCTACCGCAAGATCACCTGGACCCACGAAGTCTCCGGCACCTCCGGCTCCGACGACTGGCG CTC
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
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| Amino Acid Sequence |
>secreted protein Hcp
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYR TSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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