Pseudomonas aeruginosa FRD1, UC33_RS13240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain FRD1 contig_06_scaffold02, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CATGTCGGGGTTCCGCTGGGGATGGAAAGGGCATCATGGCTGAGGTGGCTTTATTCGTCGAACGATGGCTGGCCCTGCCGGTATATCGGCCAGGACTTCA TGCGCTGCGGAAATGGCCTGACCAGGTGCAGCGGCTTGCAATCAAAAACGCTGGGCTCGCAATCAGGGTGGTTTTGTCCGGAAGCTCGCGAAGGGGCGGC ATGGATGAATTTTGAAGGTGGGACTTCGTTAATGAACCGAAGGTATGCGGCTTCCGTGACTGGCAGGGGTAGATGAGGTTTTCGTGCAGAAAATGACCGC TGGATGGGCGCATGCGCAAACGAGGTCGTTTCGTAGAAGGGAATGGCCAAGGATGGGCCTTCTGGGTCATTGGATACGGGATATTGCAGTTTGATTGCTG TGTATTTCCAGTGTATTGGCGTTCATTTGGCAAGGGGCGTTTAAAAAGTCTAATTCGACGTAAATAATAAGCCATGCACTCATGGAAGTAGGAGATACAT
DNA Sequence for Gene
>UC33_RS13240
ATGGCACGACCCATTGCTGACCTTATCCACTTCAACTCTACAACTGTCACGGCAAGCGGAGACGTTTATTACGGCCCTGGGGGAGGTACCGGCATTGGCC CCATTGCCAGACCTATAGAGCACGGCTTGGATTCGTCCACTGAAAATGGCTGGCAAGAGTTTGAAAGTTATGCTGATCTGGGCGTTGACCCCAGACGCTA TGTTCCTCTTCAGGTTAAAGAAAAACGCAGGGAGATCGAGCTTCAGTTCCGAGATGCCGAGAAAAAACTTGAGGCGTCGGTACAAGCCGAGCTGGATAAG GCTGATGCCGCTCTTGGTCCGGCAAAGAATCTTGCACCATTGGACGTCATCAACCGCAGTCTGACCATCGTTGGAAACGCCCTCCAGCAAAAGAATCAAA AACTACTGCTGAATCAGAAGAAGATTACCAGCCTGGGTGCAAAGAATTTCCTTACCCGTACGGCGGAAGAGATCGGTGAACAAGCGGTGCGAGAAGGCAA TATTAACGGGCCTGAAGCCTATATGCGCTTCCTCGACAGGGAAATGGAAGGTCTCACGGCAGCTTATAACGTAAAACTCTTCACCGAAGCGATCAGTAGT CTCCAGATCCGCATGAATACGTTGACCGCCGCCAAAGCAAGTATTGAGGCGGCCGCAGCAAACAAGGCGCGTGAACAAGCAGCGGCTGAGGCCAAACGCA AAGCCGAAGAGCAGGCCCGCCAGCAAGCGGCGATAAGAGCTGCCAATACCTATGCCATGCCGGCCAATGGCAGCGTTGTCGCCACCGCCGCAGGCCGGGG TCTGATCCAGGTCGCACAAGGCGCCGCATCCCTTGCTCAAGCGATCTCCGATGCGATTGCCGTCCTGGGCCGGGTCCTGGCTTCAGCACCCTCGGTGATG GCCGTGGGCTTTGCCAGTCTGACCTACTCCTCCCGGACTGCCGAGCAATGGCAGGACCAAACGCCCGATAGCGTTCGTTACGCCCTGGGCATGGATGCCG CTAAATTGGGGCTTCCCCCAAGCGTAAACCTGAACGCGGTTGCAAAAGCCAGCGGTACCGTCGATCTGCCGATGCGCCTGACCAACGAGGCACGAGGCAA CACGACGACCCTTTCGGTGGTCAGCACCGATGGTGTGAGCGTTCCGAAAGCCGTTCCGGTCCGGATGGCGGCCTACAATGCCACGACAGGCCTGTACGAG GTTACGGTTCCCTCTACGACCGCAGAAGCGCCGCCACTGATCCTGACCTGGACGCCGGCGAGTCCTCCAGGAAACCAGAACCCTTCGAGTACCACTCCGG TCGTACCGAAGCCGGTGCCGGTATATGAGGGAGCGACCCTTACACCGGTGAAGGCTACCCCGGAAACCTATCCTGGGGTGATTACACTACCGGAAGACCT GATCATCGGCTTCCCAGCCGACTCGGGGATCAAGCCGATCTATGTGATGTTCAGGGATCCGCGGGATGTACCTGGTGCTGCGACTGGCAAGGGACAGCCC GTCAGCGGTAATTGGCTCGGCGCCGCCTCTCAAGGTGAGGGGGCTCCAATTCCAAGCCAGATTGCGGATAAACTACGTGGTAAGACATTCAAAAACTGGC GGGACTTTCGGGAACAATTCTGGATAGCTGTGGCTAATGATCCTGAGTTAAGTAAACAGTTTAATCCTGGTAGTTTAGCTGTAATGAGAGATGGAGGGGC TCCTTATGTCAGAGAGTCAGAACAGGCTGGCGGGAGAATAAAGATCGAAATCCACCACAAGGTTCGAATAGCAGATGGAGGCGGCGTTTACAATATGGGG AACCTTGTTGCAGTAACGCCAAAACGTCATATAGAAATCCACAAGGGAGGGAAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TATGAAGTCCAAGATTTCCGAATATACGGAAAAAGAGTTTCTTGAGTTTGTTAAAGACATATACACAAACAATAAGAAAAAGTTCCCTACCGAGGAGTCT CATATTCAAGCCGTGCTTGAATTTAAAAAACTAACGGAACACCCAAGCGGCTCAGACCTTCTTTACTACCCCAACGAAAATAGAGAAGATAGCCCAGCTG GAGTTGTAAAGGAAGTTAAAGAATGGCGTGCTTCCAAGGGGCTTCCTGGCTTTAAGGCCGGTTAGTTGGCCATCAACAAGCCCCGTTTCGACGGGGCTTG TTCCATGTTGACGCTGCTCTATCTTGACAGTCTGTCCTGAATATTCTTGAAGACAATCACATTATGAGCCGCAACCACCGCAAAACACCCATCGTCGGGC GCACGAGCTGCCGTAGCGAGCTCTCCACGTTGGCCAGCAGCCCACCTCTCCCTACTGGAAAGTCAGGTCAATAACACTGGTGCCACGTAAGGATGGGCGT
Amino Acid Sequence
>pyocin S2
MARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADLGVDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDK ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISS LQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVM AVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYE VTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGATLTPVKATPETYPGVITLPEDLIIGFPADSGIKPIYVMFRDPRDVPGAATGKGQP VSGNWLGAASQGEGAPIPSQIADKLRGKTFKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRESEQAGGRIKIEIHHKVRIADGGGVYNMG NLVAVTPKRHIEIHKGGK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site