Pseudomonas aeruginosa MRSN 20176, TN45_RS26800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain MRSN 20176 scaffold00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATGAAGAAGCCCGGCGAACGCCGGGCTTCTTCATTTCTTTCCTTGTGCTTTTTCGTTCTTTGATGAGAGCGGAAAATTATTTTTACTTATAAATAAAAA AGCACCTACACCGAAATACTGAAACACTTCTCTGGCAAACCGTGGCGGTTTTTCGGCGGACCGCCAACAAGCTGGCGAGCCCCCCTCCAAAAGTCAGAAT ACCGTCTCGCGAAATTCATTGATCGGCATCAACGATCCGGCTTGATCCGCGGCTTATAGCCCGATTTCGAGCAATTTCAAGCTTTCCCCGTAGCGGATGG CAAGACTTCCCCTATCACATGAAAAAACCGCCCTATTCCGGGCAGGTCTTAGATTCCTCTTCTATCTTTGGCACTCGCAACTTACAGGAATGCGTCATCT AATTACTTTGAGTAGGAAGCTATTGACGTGGATCAGCATTCAACAATAGCCGCTGCCGCCTAATGGCTTCACTCTCAATTCCTATAGGGAGATTCCGAAA
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| DNA Sequence for Gene |
>TN45_RS26800
ATGGCCCAAGAATCCAGCCAAAAACTCCGACTAGGAGCGCTAACGGCTCTGGTTGTCGGCTCGATGATCGGAGGGGGCATCTTCTCCCTTCCGCAAAACA TGGCAGCCAGCGCCGACGTCGGCGCCGTCCTGATCGGATGGGCGATCACCGCCGTCGGTATGCTCACCCTCGCTTTCGTCTTCCAGACCCTCGCCAACCG CAAGCCCGAACTCGACGGCGGCGTGTACGCCTACGCCAAGGCCGGCTTCGGCGACTACATGGGTTTCTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGG CTGGGCAACGTCGGCTACTTCGTCCTGTTGTTCAGCACCCTCGGCTACTTCTTCCCGATCTTCGGCAAGGGCGACACCGTCGCCGCGATCGTCTGCGCCT CGGTCCTGCTCTGGGCCCTGCACTTCCTGGTGCTGCGCGGGATCAAGGAAGCGGCGTTCATCAACACCGTCACCACCGTGGCCAAGATCGTGCCGCTATT CCTGTTCATCCTGATCTGCCTGTTCGCCTTCAAGCTGGACATCTTCACCGCCGACATCTGGGGCAAGAGCAACCCGGACCTGGGCAGCGTGATGAACCAG GTGCGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGGCATCGAGGGCGCGAGCATCTTCTCCTCCCGCGCGGAAAAACGTTCCGACGTCGGCAAGG CCACCGTGATCGGCTTCATCACCGTCCTGCTCCTGCTGGTGCTGGTCAACGTGCTGTCCATGGGCGTGATGACCCAGCCGGAACTGGCCAAGCTGCAGAA CCCGTCGATGGCGCTGGTACTCGAGCATGTGGTCGGCCACTGGGGCGCCGTGCTGATCAGCGTCGGCCTGCTGATCTCGCTGCTGGGCGCGCTGCTCTCC TGGGTGCTGCTGTGCGCCGAGATCATGTTCGCCGCGGCCAAGGACCACACCATGCCGGAGTTCCTGCGCCGCGAGAACGCCAACCAGGTGCCGGCCAACG CCCTGTGGCTGACCAACATCTGCGTACAGGTGTTCCTGGTGGTGGTGTTCTTCACCTCGGGCGACCCGGACGGCATGGACCCGTACACCAAGATGCTGCT CCTGGCTACCTCGATGATCCTAATTCCGTACTTCTGGTCCGCCGCCTATGGCCTGCTGTTGACCCTGAAGGGCGAGACCTACGAGAACGATGCCCGCGAA CGCAGCAAGGACCTGGTCATCGCCGGCATCGCTGTGGTCTACGCGGTCTGGCTGCTCTACGCCGGTGGCCTGAAGTACCTGCTGCTGTCCGCCCTGCTGT ATGCGCCCGGCGCGATCCTCTTCGCCAAGGCCAAGCACGAGGTCGGCCAGCCGATCTTCACCGGAATCGAAAAACTGATCTTCGCCGCAGTCGTCATTGG CGCCCTGGTGGCTGCCTACGGCCTCTACGACGGTTTCCTCACCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTACTCCACTGGAGACGTGAAATGAGCACGGAAAAAACCAAACTTGGCGTCCACTCCGAAGCCGGCAAACTGCGCAAAGTGATGGTCTGCTCGCCCGGAC TCGCCCACCAGCGCCTGACCCCGAGCAACTGCGACGAGTTGCTGTTCGACGACGTGATCTGGGTGAACCAGGCCAAGCGCGACCACTTCGACTTCGTCAC CAAGATGCGCGAGCGCGGCATCGACGTCCTCGAGATGCACAACCTGCTGACCGAGACCATTCAGAACCCGGAAGCGCTGAAGTGGATCCTCGATCGCAAG ATCACCGCCGACAGCGTCGGCCTGGGCCTGACCAGCGAGCTGCGCTCCTGGCTGGAGAGCCTGGAGCCGCGCAAGCTGGCCGAGTACCTGATCGGCGGCG TCGCCGCTGACGACCTGCCCGCCAGCGAAGGCGCCAACATCCTCAAGATGTACCGCGAGTACCTGGGCCATTCCAGCTTCCTGCTGCCGCCGTTGCCGAA
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| Amino Acid Sequence |
>amino acid APC transporter
MAQESSQKLRLGALTALVVGSMIGGGIFSLPQNMAASADVGAVLIGWAITAVGMLTLAFVFQTLANRKPELDGGVYAYAKAGFGDYMGFSSAWGYWISAW LGNVGYFVLLFSTLGYFFPIFGKGDTVAAIVCASVLLWALHFLVLRGIKEAAFINTVTTVAKIVPLFLFILICLFAFKLDIFTADIWGKSNPDLGSVMNQ VRNMMLVTVWVFIGIEGASIFSSRAEKRSDVGKATVIGFITVLLLLVLVNVLSMGVMTQPELAKLQNPSMALVLEHVVGHWGAVLISVGLLISLLGALLS WVLLCAEIMFAAAKDHTMPEFLRRENANQVPANALWLTNICVQVFLVVVFFTSGDPDGMDPYTKMLLLATSMILIPYFWSAAYGLLLTLKGETYENDARE RSKDLVIAGIAVVYAVWLLYAGGLKYLLLSALLYAPGAILFAKAKHEVGQPIFTGIEKLIFAAVVIGALVAAYGLYDGFLTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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