Pseudomonas aeruginosa NCGM1900, NCGM1900_RS28815
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGCTGGCCGAGCAGATCGGCCGCCGCCCGCCGAGCATCGATACCACTGGCCTGCTGCCGCGCGGCGCGCTGGCTGGCTGATCCCCCCTCGACTGGAG CACTCCCATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTTTCCGGCCAGGTGCCGGGCCAG GCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCGCTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACCA TCTACCTGAAGGACATCGCCCGCGATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCGCCCAGCCGGACCACCGTCCAGGC GGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGACTTACTTTCCATAGCCATAAGAAAAAAGAGGCAGAACCTCCG
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| DNA Sequence for Gene |
>NCGM1900_RS28815
ATGAAAACCCTTGTATCCAGCACCCTCGCCCTCTCCCTGTCGCTCGCCATCGGCGCCGCGCAGGCCGAGGAACTCAGCGGCACCCTGAAGAAGGTTGCCG ACAACGGCACGATAACCCTGGGTTATCGCGATGCCTCGGTGCCTTTCTCCTACCTTGGCGATAACAGCGGCCAGCCCATGGGCTATTCGGTGGAACTGGC CGGCAAGGTGGTGGAACGGCTCAAAAGCACCCTCGGCAAGCCGGAACTCAAGGTGAAGTACAACCTGGTCACTTCGCAGACTCGCATCCCGCTGGTGCAG AACGGCACCGTCGACCTGGAGTGCGGCTCCACCGGGGTCACCGCCGAGCGGCAGAAACAGGTGGCGTTCTCCTATGGCTTCATCTACGTCAAGGGCCAGT TGCTGACCCGCAAGGACAGCGGCATAGCCCACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTACCTGAAGAA CTACAACGCCGAACACAAGCTGGGGATGAACGTGGTCAGCGCCAAGGACCACGGCGAAGCCTTCCAGATGCTGCAATCGGGTCGCGCGGTGGCCTTCTAC ATGGACGATGCGCTGCTCTACGGCGAACGCGCCAAGGCGCGCCAGCCGCACGACTGGGTGGTGGTCGGCGAGCCGCAATCGCGGGAGATCTACAGCTGCA TGGTGCGCAAGGACGACCCGCAGTTCCTTGCCCTGGTCAACGAGACCCTGGCCGGGCTGTATCGCTCGGGCGAGATACAGGGCATCTACCAGCGCTGGTT CCAGCAGCCGATCCCGCCCAAGGGGTTGAACCTGGAGTTCCCCATGACCGCGGAGCTGAAGGCGATCCTCGAGAACCCCACCAGCGATCCGGTGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCTAGCGCTGCAGGCCGAGGTGGCGGATCGATGGCGTCGGCGCGTCCAGGCGCGACCAGACGTCGTCGGCCAGTTCGGCCGGATAGAAAGACGGCAG GCCAGGCAGTTCGTCGCGGGCGATCCAGCCGACCTCGCGGATATCGAACTCGTCGCCGCCCAGGCCCTTCAGGTTGGCCAGGGTCGGCTCGCCACGCCAG GCGTCGATGCGGTAGAACAGCTCCATGTGGAAGCGCCCGGCGGCGGGTTCGGCGAATTCGCGCACGTAGACCAGCGGGCCGACGTCCACCCGCAGGCCGG TCTCCTCGAAAAACTCGCGCCGGACGGTATCCTTCGTCGATTCGTCGCATTCCGACTCGAAGCCGCCGCCGGGCGGAATCCAGTAGATGTCGCCGCCGAC CTCGTGGCGGACCAGCAGGATGCGTTGCTCCACCACCAGCAGGCCGGCGGCGCGGATACGGTGTCGCAAGGCCTCGGCCATGCTCGTTCTCCCGGCGCCA
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| Amino Acid Sequence |
>ABC transporter
MKTLVSSTLALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPMGYSVELAGKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQ NGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAFQMLQSGRAVAFY MDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDPQFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTSDPVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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