Strain | Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984. [Details] | |
DNA Sequence Upstream of Gene |
AACGCGGGCTGACCGTGCTCGGCACCAGCGGCTACCTGGCGATGGTGATCCTCGGCTCCTACGTCGGCTACGTGGTCAGTGCCTTCCTCACCGACCTGAT CGGGCGCAAGAAGAACTTCGTCCTGTTCGCCGTCGGCTCCTTCACCGTAGTCCTGCTCTACACCCAGTTGCCGGTGAGCAACGGCGCCATGCTATGGCTC GGCTTCCCGCTCGGCTTCTTCGCCTCGGGCATCTTCAGCGGCATGGGCTCGTTCCTCACCGAGCTGTTCCCGACCCGCATCCGCGGCTCCGGCCAAGGCT TCTGCTACAACGCCGGGCGCGCCATCGCCGCGCTGTTCCCGATGCTGATCGGCATGCTCGGCCAGAAGCTCTCGCTGGGCCTGGGGATCGGCGCCTTCGC CGCGGTCTCCTACGGCGTGGTGATCCTCGCCGCCCTCAGCCTGCCGGAAACCCGCGGCAAGCAACTGGAACTCTGAGCCGTCGACCGAGGAAACCCCAGC
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DNA Sequence for Gene |
>NCGM1984_RS15350
ATGCATCCCACTCCCCGCCTGGCTGCCGCGCTGCTCGCCGGCAGCGGGCTGGGCTGGCCGCTGCTCGCCCAGGCCGACCTGGTCGAGGACAGCCACGCCA GCCTCGCACTGCGCAACTTCTACTTCAACCGCGACTTCCGCCAGAGCGGCGCGCGCGACAACGCCGACGAATGGGCGCAGGGCTTCCTCCTGCGCCTGGA GTCCGGCTTCAGCGCAGGCACCGTCGGCTTCGGCGTCGACGCCATCGGCCTGCTCGGCCTCAAGCTCGACTCCGGCGGCGGCAGCGGCGGAACCGGGCTG CTGCCGGCCGACGGCTCCGCCGGGGGCTCCCAGGACGACTACGCCAAGCTCGGCCTGACCGCCAAGGCGCGGGTCTCCAACAGCCTGCTCAAGGTCGGCG CGCTGCACTTCAAGAGCCCGCTGGTCTCGGCCAACGACACCCGCCTGCTGCCGGAACTGTTCCGCGGCGCGCTGCTCGACGTGCAGGAGATCGACGGCCT GACCCTGCGCGGCGCGCACCTGGACCGCAACAAGCTGAACAGCTCCAGCGACTACCAGGTGTTCAGCGCCAACCGCATCGGCGGGCGCAGCGATGCCTTC GACTTCGCCGGCGGCGACTATCGCCTGACCCCGGCGCTGACCGCCAGCCTGCACCAGGGTCGGCTCAAGGACATCTACCGACAGACCTTCGCCGGCCTGG TACACACCCTCGACCTCGGCGGACAGCGCTCGCTCAAGAGCGACCTGCGCTTCGCCCGGGCCAGCGAGGACGGCGGCTTCCGCGAACTGGACAACCGCGC CTTCGGCGCCCTCTTCAGCCTGCGCCTGGGCGCCCACGCGGTGGCCGCCGGCTACCAGCGGATCAGCGGCGACGATCCCTATCCCTACATCGCCGGCAGC GACCCGTACCTGGTCAACTTCATCCAGATCGGCGACTTCGGCAACGTCGACGAGCGCTCCTGGCAACTGCGCTACGACTACGATTTCGGCGCGCTCGGCC TGCCCGGCCTGAGCTTCATGAGCCGCTACGTCTCCGGCGACAACGTCGCCCGCGGCGCGGCCAACGACGGCAAGGAATGGGAACGCAACACCGACCTCGG CTACGTGGTGCAGAGCGGGCCGCTGAAGAACCTCGGAGTGAAATGGCGCAACGCCACGGTGCGTTCGAATTTCGCCAACGACCTCGACGAAAACCGCCTG ATCCTCAGCTACAGCCTGGCGCTGTGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGTCCGGCGAGCAATGACCTGAAGGAACCAGCATGAACAGCCTGTTGTTGAACTGCGATATCGGCGAGAGCTTCGGTGCCTGGAGCATGGGCCTGGACGC CGAGGTGATGCCGCTGATCGATTGCGCCAACATCGCCTGCGGCTTCCACGCCGGCGATCCCGGCACCATGCGCCGCACCGTGGCCCTGGCGGTGGAGCAT GGCGTGCGCATCGGCGCGCACCCCGGCTACCCCGACCTGGTCGGCTTCGGCCGGCGCTCGCTGGCCTGCTCGGCGCAGGAAGTGGAAGACCTGCTGCTCT ACCAGATCGGCGCCCTCGACGGACTCTGCCGCGCCCAGGGCGAACGGGTACGCTACGTCAAGCCGCACGGCGCGCTGTACCAGGACATGATGCGCGACCC GGCGATCCTCGCCGCCGTGCTGCGCGCACTGGCGGCCTACGACCGCACCCTGCCGCTGATGCTGATGAGCACCCGCGACAACACCGCGGCGCGCGCGCTG
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Amino Acid Sequence |
>porin
MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLALRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSAGTVGFGVDAIGLLGLKLDSGGGSGGTGL LPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAF DFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGS DPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRL ILSYSLALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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