Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_37_a1, TC72_RS11080 (fabG)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGTGGTCAGCGCGGTCAACTTCAACGCGCCGGGGCAGGTAGTGATCGCCGGTGCCGCGGCTGCCGTTGAGCGTGCCATCGAGGCATGCAAGGCACGC GGCGCCAAGCGCGCGGTGGCGCTGCCAGTCAGCGTGCCGTCGCATTGCGAACTGATGCGTCCGGCCGCCGAGCAGTTCGCCGCCTCGGTCGAAAGCCTGC AGTGGCAGGCGCCGAAGATTTCGCTGGTGCAGAACGTCAGCGCCGCCGTGCCGGCTGATCTCGATACGCTGCGCCGCGACCTGCTGGCACAGCTGTACAG CCCGGTTCGCTGGGTGGAGAGCATCCAGCTGCTGGCGGAAAAGGGCGTCACCGAGCTGGTCGAGTGCGGGCCGGGCAAGGTCCTGGCAGGCCTCAACAGG CGCTGCGCGAAGGGCATCAATACCCATGGCCTGGATGGCGTCGAGGCGTTCGCCGCCACGCGCGCCGCCCTGGCCTGAGAGAGAGAAAGGAGAGAATCCC
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| DNA Sequence for Gene |
>TC72_RS11080
|fabG
ATGAGTCTGCAAGGTAAGGTCGCATTGGTAACCGGCGCCAGCCGTGGCATCGGCCAGGCGATTGCGCTGGAACTGGGGCGCCTGGGTGCCGTGGTCATCG GCACCGCGACCAGCGCGTCCGGCGCCGAGAAGATCGCCGAAACCCTCAAGGCCAATGGCGTCGAGGGTGCGGGCCTGGTCCTGGACGTTTCCAGCGACGA ATCCGTAGCCGCGACCCTGGAGCATATCCAGCAGCATCTCGGCCAACCGCTGATCGTGGTCAATAACGCCGGCATCACCCGCGATAATCTGCTGGTGCGC ATGAAAGACGACGAGTGGTTCGATGTGGTCAACACCAACCTGAACAGTCTCTACCGTCTGTCGAAAGCCGTTCTGCGCGGTATGACCAAGGCCCGCTGGG GGCGCATCATCAACATCGGTTCCGTGGTCGGCGCCATGGGCAATGCCGGGCAAACCAACTATGCCGCGGCGAAGGCCGGCCTGGAGGGCTTCACCCGTGC GCTGGCCCGGGAAGTCGGTTCGCGTGCCATTACCGTGAATGCGGTGGCGCCGGGCTTCATCGACACCGACATGACCCGCGAGCTGCCGGAAGCCCAGCGC GAAGCGCTGCTGGGCCAGATTCCGCTGGGTCGCCTGGGGCAGGCGGAAGAGATCGCCAAGGTGGTCGGCTTCCTCGCTTCGGACGGCGCAGCCTATGTGA CCGGGGCCACCGTGCCGGTCAATGGTGGGATGTACATGAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGTGACGTTACCTTTCTCGGGTCTGTCATAAGCGCTGTCTAGAATTCGTTGCGGAATTGCAGCCGGGTTATTAGATAGAATTATCGAAGTGGCCGTGGG AAGGTGAGGCGTTCAGCTTGAAAAGCAGAAAACCCTTTCTATACACTTACCCGCAGCCCAGCTGCTCGGATTTTCCATAGGAGTGAAAACAAGGTATGAG CACCATCGAAGAACGCGTTAAGAAGATCGTCGCTGAACAACTCGGCGTGAAGGAAGAAGAAGTCACCAACAGCGCTTCCTTCGTCGAAGACCTGGGCGCC GACTCCCTTGACACCGTCGAGCTGGTGATGGCTCTGGAAGAGGAATTCGAGACCGAAATCCCTGACGAGAAAGCTGAAAAGATCACCACCGTTCAGGAAG CCATCGACTACATCGTTGCTCACCAGCAATAAGTAGTCGTCGGATTTTCCGACGTGGAAAAGCCGCACAGCCTGTAAGGGCGTGCGGCTTTTCTTTAGCG
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| Amino Acid Sequence |
>3-oxoacyl-ACP reductase
MSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGITRDNLLVR MKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQR EALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYMS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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