Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_4_a1, TC72_RS09835
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGTTCTCCAACTACGCGTCCCTGCACGAGAAAGGCAGCATCGTCCGCGGTACCGTGAAGGAAGTCGACGCCAAGGGCGCTGTCATCAGCCTGGGCGAC GACATCGAAGGTATCCTGAAGGCTTCCGAAATCAGCCGTGACCGCGTCGAAGACGCGCGCAACGTCCTGAAGGAAGGCGAGGAAGTCGAAGCCAAGATCA TCAGCATCGACCGCAAGAGCCGCGTCATCAGCCTCTCCGTCAAGTCCAAGGACGTCGACGACGAGAAGGACGCAATGAAAGAACTGCGTAAGCAGGAAGT AGAAAGCGCTGGTCCGACCACCATCGGTGATCTGATCCGTGCTCAGATGGAGAATCAGGGCTAAGTCTCTGATCCATCATGAAAAAGGGCGGCCTAGGCC GCCCTTTTTCGTTTTCCCCTTCTTGGACCTGTTCAAAGACTGATCAGCATGCTAAAAGAGACCTGAGCTGATCTAGCCGCTTGAAAAAGAAGGGAAAACC
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| DNA Sequence for Gene |
>TC72_RS09835
ATGACCAAGTCGGAGTTGATCGAACGGATCGTTACCCATCAGGGGCAACTGTCCGCGAAGGATGTCGAGTTGGCAATCAAGACCATGCTGGAGCAAATGT CCCAGGCCCTGGCGACCGGGGACCGGATCGAGATCCGTGGTTTCGGCAGCTTTTCCTTGCACTACCGCGCCCCGCGCGTCGGTCGCAACCCCAAGACCGG GGAGTCGGTACGCCTCGACGGCAAGTTCGTGCCGCACTTCAAGCCGGGCAAGGAGTTGCGGGATCGGGTCAACGAGCCGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCTGGCAGATACGAGGTTTTTTCAATGCAATGGCTCGGGCGGATTTTGACTGCTGTGTTTGTGTTGGTGGTTGCGCTGGTGGTCCTGGTTTTCGTATTG GAAAATCAGAATAGCGTCAGCCTTGCCTTCCTTGGGTGGCACACTCCTGACGGTCCGCTTTCTCTCTTCGTGTCTCTGGCTTTCATCCTCGGTGGGCTCG GTGGGTTGTTGAGTGGGGCATTGCTTCGTTTGAGGGGGCGTCGACAAAAATCTCTTCGCTCTGAATCAACCTCTCTATAAGTTCGTCCCTTCCGAACTAA TTGCGTGCCAGCTCCGCAGTGGGTCTCTTCTTGCTGAAAAGGGTTGCTGCCGGCGGGTCGTAACCTCTCGTGGAAGGTATCCTCTGGCCTGCTTGACCCC ATTTTTCTGCTGTGGGCACTAATCTCTGACTGTCTTGTCTAACATACGTCCGTGCATCCTGAATCGCGAGCTAGGCTCTGTTATCAGCGATTGGTGCGCT
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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