Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_30_a1, TC72_RS19920 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAATCGCCGTGGTCACGCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGAACCATGGTGA ACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGAGCAGCTCTGGCGGATCGAGGAATTCCTCCTCGATCGAGGCTACGCGGTGCTCAGCGC GGCGAGTCGCGACGAAGCCCTCGACCACCTGGCCTCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTTCTCTGAGCGGCAGCATG CTCATCGAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGACCCGGCGGCACCCTATCCGGTGC TGCTCAAACCGGTGACCCTGGAAGAACTGGGGAAAGCCATCGACATGGTCCTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGACCACCGAGGAGCCCACC
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| DNA Sequence for Gene |
>TC72_RS19920
|ligD
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGCCGCAAGCCTCGCAAGGACAGCACCGGGC TGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCACTACGACTTCCGCCTGGAGCTGGATGGCACCCTGAAGAGCTGGGCGGTGCCCAAGGG GCCGTGCCTCGACCCGGCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCCCAGGGGTACTAC GGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGCGAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATG GCGAGAAACTCTCCGGGCGTTGGCACCTGATCCGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAG CCTGGATCGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGCGAAACCGCCACGCCCGCGGCCAGG CCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGGATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGG CCTACGAACTCAAGCTGGACGGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACCGAACGCCT GCCGCACCTGGAGAAGGCCTTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTGGTCGTCCTCGACGAGGAGGGTCGACCGGACTTCCAG GCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAGAACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCC TGGAGGAGCGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGAGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCGGAAGACCCCCGCGACCTGCT GGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGCAGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGC CAGTTGCGCCAGGAGTTCGTGATCGTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCACATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGACGAGG AGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGTCTGAAGAAGGTCCGTGAGCGCCTGGAACCCCTCGCGGTCCGCTCCAG CCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACCGGGTCGGTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGC GGGATCATCCGCCAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCGCCGCCGCTGCGCGGCG CGCGCAAGGCCAGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGCCATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCT GGAACTCGCCGAGTTCCATGCGCGCTACGCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGATGCCGGTCATCCGCCGCTGTTGCAAATCC GCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATCGAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGT CCTCGACCTCGACCCGGACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGCCTGCGCGCCTTC CTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGCTGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGC ACTTGGCGCGCCTGATGCCGGAGCGTTTCTCGGCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGC CAGCACCGTGGCGGCCTACTCGGTGCGCGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTCGACTCGCTGCAGGGCGCCAACCAA TGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGACGATCCCTGGGCCGACTACACCGGCACCCGCCAGCGCATCAGCGCGGCCATGC GGCGCCAGCTCGGGCGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGTCCGCGAAAAAGGCGGAACTCCCCCGGCGCACAGGGCCTCCACCGTGCAACGAGATGCCGAGGAGGCCCCCGATGGATACCGCCTACCTGATCCTCG CGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGCGTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGAT CCTGCTCCTGCCCGTGCTCGGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCGCCGGAACACAGCAAGTGAACCCCACTG GAGATTGCCCATGAACAGCGAAACCTGTGCCTGTCCCAAATGCACCTGCCAGCCCGGCGCCGATGCCGTCGAACGCGACGGCCAGCACTATTGCTGCGCG GCCTGCGCCGGCGGCCACCCCCAGGGCGAGCCGTGTCGCGACGCCGATTGCCCCTGTGGCGGCACCACCCGGCCCCAGGTGGCGGAGGATCGCCAGCTGG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGYY GAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQPQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGETATPAAR PARRGKSGGKTPMPEWIAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEGRPDFQ ALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKC QLRQEFVIVGYTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRG GIIRQAVFHGLREDKPAREVTGERPAGPPPLRGARKASAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGG ELFFQKHAARLKIPGIVQLDPALDAGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAF LKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQ WNLRSLPQRLDELAGDDPWADYTGTRQRISAAMRRQLGRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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