Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_30_a1, TC72_RS16395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGACCAGGCCGTCCATCTGCAGTTCGTCCACTGCCTGGCGGATGTCGTCGAGTTCCATCCGGTTCACGCTGCGCTTCAATTGTTCGACGTTCAGCATC TGTCTGTCCTTTCCGTATCCGTTACCGAGCATTCATCGAAGGCTGAGCTGGCTGTACGAATATACAGTTAAATGTGCGATGATGCGAGCGAACGGAGGGC GAGGCGATGCAGTGGAACAGGAGGGGCGGAATGCAAAAAGCCCCGGCGCTATCGCTAGTGCCGGGGCTTTTCGAATGTGGTTGCGGGAGCTGGATTTGAA CCAACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCGTCTGTGTGGGCGCATTCTACGGACTCTCGTCGGGCTGTCAATCGAT TTTTCGAAAAAAGTGTTTTTTCTTCAAATGCTTAGCGCTTGCCCAATGTTAGAATTCAGCGCTCCGGGGCAGGCCCGGCGGGGCTTGTAGCGAGATTCCG
|
|
| DNA Sequence for Gene |
>TC72_RS16395
GTGCGGAAAATCATCCATATAGACTGCGACTGTTTCTACGCCGCCCTCGAGATGCGCGACGACCCCAGCCTGCGCGGCAAGGCGCTGGCGGTTGGCGGTT CGCCGGACAAGCGCGGAGTGGTCGCCACTTGCAGCTACGAGGCGCGAGCCTATGGCGTGCGCTCGGCGATGGCCATGCGCACGGCGCTCAAGCTGTGTCC CGATCTGCTGGTGGTGCGCCCGCGTTTCGATGTCTACCGGGCGGTGTCGAAGCAGATCCATGCGATCTTCCGCGATTATACCGATCTGATCGAGCCGCTT TCGCTGGACGAGGCCTACTTGGACGTCAGCGCTTCGCCGCATTTCGCCGGTAGCGCCACGCGGATTGCCCAGGACATCCGCCGCCGGGTGGCCGAGGAGC TGCACATCACCGTTTCGGCGGGCGTCGCGCCGAACAAGTTCCTGGCCAAGATCGCCAGCGACTGGCGCAAGCCGGACGGGCTGTTCGTGATTACCCCGGA GCAGGTCGACGGGTTCGTCGCCGAGTTGCCGGTGGCCAAGTTGCATGGCGTCGGCAAGGTCACGGCGGAGCGCCTGGCGAGGATGGGCATCCGCACCTGC GCCGACCTGCGCCAGGGCAGCAAGCTGAGCCTGGTGCGCGAGTTCGGCAGCTTCGGCGAACGCCTGTGGGGACTGGCCCATGGTATCGACGAGCGACCGG TGGAAGTCGACAGCCGGCGCCAGTCGGTGAGCGTCGAATGTACCTTCGATCGCGACCTGCCGGACCTGGCGGCTTGCCTGGAGGAACTGCCGACCCTGCT CGAGGAGCTGGACGGACGCCTGCAACGCCTGGATGGCAGTTATCGGCCGGACAAGCCGTTCGTTAAACTGAAGTTTCACGATTTCACCCAGACCACGGTG GAACAGTCCGGCGCCGGGCGCGACCTGGAGAGCTACCGGCAATTGCTCGGCCAGGCCTTTGCCCGTGGCAATCGTCCGGTGCGCCTGATCGGCGTCGGCG TGCGCCTGCTCGACCTGCAGGGCGCCCACGAACAACTCAGGCTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCTCCTCATGGCGTCAACGAAGTCGCGAGGTTCCGCGGCGACGGCTCTTCCCCTACCGGCAAGGCGCTGAAGCGGCCGAGATCCTGCAGCAGTTCCAGG CGTGCTGCACGGAGTGGGCCGCGTATGGCTTCCTGTTGTTCCACGTCGAGCGGGCGGTCGTCGCCATCGCTCACCGGACCGTGGTGACGGTCCGCGCCAC GCAGTGGGAAGCTCACCTTGAAGCCTTCGCCCAGGTAGGCGATGCGCGTGGTATCGGCGCTCACCGCATAGTCGCGATGGTAGTCCGCTGCGAGCAGGTC CTGTCCCAGCGAGTAGTCGCGGGGCGGATTGCGTACGCCCAGCAGCGGCAGGAGCGTTGCGGGCAGGTCGATGTGGCTGGTGATGCCGCGGACGGCACGG GGCGCCTGTCCGGGAATGCTCAGCACGGCGACGGTGCCGGTCTGGTAGCGATTGAACTCGGTATTGTGGCCCCAGCGCGAGCGTTCCATGAACTCTTCCC
|
|
| Amino Acid Sequence |
>DNA polymerase IV
MRKIIHIDCDCFYAALEMRDDPSLRGKALAVGGSPDKRGVVATCSYEARAYGVRSAMAMRTALKLCPDLLVVRPRFDVYRAVSKQIHAIFRDYTDLIEPL SLDEAYLDVSASPHFAGSATRIAQDIRRRVAEELHITVSAGVAPNKFLAKIASDWRKPDGLFVITPEQVDGFVAELPVAKLHGVGKVTAERLARMGIRTC ADLRQGSKLSLVREFGSFGERLWGLAHGIDERPVEVDSRRQSVSVECTFDRDLPDLAACLEELPTLLEELDGRLQRLDGSYRPDKPFVKLKFHDFTQTTV EQSGAGRDLESYRQLLGQAFARGNRPVRLIGVGVRLLDLQGAHEQLRLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|