Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_15_a1, TC72_RS26190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTGGGCATGCCCGGCAACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGTCCCGCTCATGCATCGACCAGCTTCAACGCCTGGGATTCGACACC GTTCGATGACCGATATGTCCTGCGCGACGAAGCCACGCTGGAGCCGTTACCCAATATCGCCGTTGAAGTGATACGAGGCGATGGTGGTGTGGTGAAACTG ATGACCGACAGCCAGGGCCGTTTACCCAAGCAACAACACCTGGCCATGGACCCGGTGCAGATACGCATCCTGGGCAAGGGCAGTCACAACAGCGACACGG AGTCCAACAC
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| DNA Sequence for Gene |
>TC72_RS26190
ATGAGCAGCGAACCGCTCGAGCCGAATCAGGATGTGATCATCCCTCGCTCTCGCGACAGTCTGGGACGGCCTGTCTACAAGGCGCAGTTGACCCGTACCG ACAACCAGAGCGAAAAGGTGGCACTGATTCGGCAGACCGCTCCCCTGCCGGTGATCTTCATTCCGGGGATCATGGGAACCAACCTGCGCAACAAGGCAGA TAAAAGCGAGGTCTGGAGGCCGCCGAATGGTCTGTGGCCCATGGATGACCTGTTTGCCTCCATCGGTGCGTTGTGGACTTGGGCCTGGAGGGGTCCAAAG GCCCGTCAGGAGCTCCTGAAGGCTGAGCAAGTAGAAGTCGATGACCAGGGTACGATCGATGTCGGTCAATCTGGTTTGTCCGAAGAAGCTGCCCGCCTGC GCGGCTGGGGCAAGGTCATGCGCAGTGCGTATAACCCGGTCATGGGATTAATGGAGAGGCGACTGGATAACATCGTCAGCCGGCGGGAACTCCAGGCATG GTGGAATGACGAAGCCCTCTCTCCTCCTGGAGATCAGGGTGAGGAGCAGGGAAAGGTTGGGCCGATCGATGAAGAGGAATTGCTCAGGGCCAGCCGATAC CAGTTCGATGTCTGGTGCGCCGGCTATAACTGGCTACAGTCCAACCGGCAGTCGGCGCTGGATGTACGCGACTATATCGAGAATACCGTGTTGCCTTTCT ACCAAAAGGAGTGCGGTCTCGATCCCGAGCAGATGAGACGTATGAAGGTCATTCTGGTCACCCATTCGATGGGAGGGCTGGTGGCTCGCGCCCTGACGCA GTTGCACGGCTATGAGCGCGTATTGGGGGTGGTGCATGGCGTACAACCTGCGACAGGTTCCTCGACCATCTACCATCATATGCGCTGTGGCTATGAAGGT ATCGCACAGGTCGTGCTGGGGCGAAATGCCGGTGAAGTGACAGCCATTGTCGCCAATTCGGCCGGCGCGCTGGAATTGGCCCCTAGCGCGGAATACCGGG AAGGGCGTCCCTGGCTGTTTCTATGCGACGCGCAGGGGCAGGTGCTCAAGGATATCGATGGAAAGCCTCGGGCTTATCCGCAGAATCAGGACCCTTATGA AGAGATATACAAGAACACTACGTGGTATGGATTGGTGCCTGAGCAAAATTCACAATATCTGGACATGTCAGACAAAAAAGAAGGTTTAAGAGTTGGCCCC CGTGATAACTTTGAAGACTTGATAGATAGCATTGCTAATTTTCATGGTGAATTATCAGCAGCAGGATATCACTCAGAGACCTATGCCCATTACGGAGCTG ACGATAGCCGCCATAGTTGGCGCGACCTGATCTGGAAGGGTGACCCTACCCCTCTGGAGACCCCCGGTGCCACACTCAACGACGATGAGAACGGCACTTA CAACAGTTGGTTCCGCCGGGGCTTGCCCACCATAGTGCAGGGTCCGCTGGAGACGGGAAATCCTCTGGACGCTTCCGGTAGCGGAGGTGACGAAACGGTA CCGACCGACTCCGGCCAGGCGCCTGCCCTGGCGGGCGTCAAGGCCAGCTTTCGGCATGGCAGCAAGGGCAAGGGACAGGCCAATACCAAACGGGGCTATG AGCACCAGGAGAGTTACAACGATGCTCGTGCTCAATGGGCAGCGCTATATGGGGTGATCAAAATCACCCAGTTGGCGGATTGGCATCCTAATGACAAAGG AGGGACATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCATCCCCGTCGGTTGCTTGCTGTACTTGGAGTGGTGGTCTTGACCAGCATGACCAGTTGCACTTCGTTTTCTTCTTCTCGGAGCTCTTCCATGGACAA GACCGGATGGATTACTCATTGCTTTGGTCGCTTTCTGATTGATCTGCCACCTGACGCGGTAATCAATGCCGGATACTACCTATGGGGAGACAGAATTGAG TACTTAGATGATAAACCTACCGAACTGGCAGCCAGGGTTGATCGTCTTGAACAAGAGTGGAGGACTCAGAGACATAAATCCAAAGGTAACATGTTTCTTC GTAAAATTGACTTTGGCAATGAATCAGTAGGTTTATTGTCTTGGTCTTCAGAGGTTGCCTCTAAAACCTATTTATTGGATACCTATGTTACATCTAAGCC TACGTGGCATGTCTATCGTTGGAAAGGGAAAGTTTCGGTAGACAGAGAGCAACATGCTGTGGAGATATCTAGGGCTTTAGCTCGAAATCTACGTTCTCGC
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| Amino Acid Sequence |
>hypothetical protein
MSSEPLEPNQDVIIPRSRDSLGRPVYKAQLTRTDNQSEKVALIRQTAPLPVIFIPGIMGTNLRNKADKSEVWRPPNGLWPMDDLFASIGALWTWAWRGPK ARQELLKAEQVEVDDQGTIDVGQSGLSEEAARLRGWGKVMRSAYNPVMGLMERRLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVGPIDEEELLRASRY QFDVWCAGYNWLQSNRQSALDVRDYIENTVLPFYQKECGLDPEQMRRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSSTIYHHMRCGYEG IAQVVLGRNAGEVTAIVANSAGALELAPSAEYREGRPWLFLCDAQGQVLKDIDGKPRAYPQNQDPYEEIYKNTTWYGLVPEQNSQYLDMSDKKEGLRVGP RDNFEDLIDSIANFHGELSAAGYHSETYAHYGADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETV PTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADWHPNDKGGT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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