Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_3_a1, TC72_RS20335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCACGCGGCCGTCCTCGCCTCGGTAGAAAACCATCGGCTCGTCGCAGATGCGTCGGCCGAGCGGCTTGCCGGCCAGTTCGTCGGGGGTGCAGGCCACGT ACCAGGCGTTCTTCGGAAACATCGTCGGATCCTCTCGTTGTTTTTGTAATTGGATCCAATGATTCGCGAGGCAACTTTTCCAAGTCAACCGCTTCTGTAC AAAAAATAATCTGTTCGATAGTCGCACATAAAAAACTTCAGGAATAAATTGCCAAATTATCTCGTTCCAGAGCCTTTCTCGGATTTCGCTGACAGTGGGA TATCCGCTGGCCATCCGTTTTCTTGTCGCCAAAATGGATCCAATAGGATTGCGGCATCGACGCAACGGTGCCAGGGTGCCTGCGCTTGCCGTGCCTACAA CAACAAGAAAAAGGGTCTTCCCGATGATGGATTCCTGCATTCCCGCGCCTCGCTCCCGCCTGCCGTCGCTTCTTTCCTGTCCGCTCGGGGAGGGCCGCCC
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| DNA Sequence for Gene |
>TC72_RS20335
ATGAACCGGGACTTGCGCCGCGCTCTCGACGACGAACCGATGCGTCCGTTCCAGTGGCTGGCGGTGGCTGTGTGCATCGTGCTCAACCTGATCGATGGCT TCGACGTGCTGGTGATGGCCTTCACCGCATCCTCGGTGGCCGCCGAATGGAACCTTGGCGGCGCCGAGATCGGCCTGCTGCTCAGCGCCGGCCTCTTCGG CATGGCCGCCGGCTCGCTGTTCATCGCGCCCTGGGCCGACCGCTGGGGGCGCCGCCCGCTGATCCTCGCCTGCCTGGCGCTGTCGGGCCTGGGCATGCTC GCCTCGGCGCTGAGCCAGGCGGCCTGGCAACTGGCGTTGCTGCGCGGGCTGACCGGACTGGGTATCGGCGGCATCCTCGCCAGCAGCAACGTGATCGCCA GCGAGTACGCCTCGCGCCGCTGGCGCGGCCTGGCGGTAAGCCTGCAGTCCACCGGCTACGCGCTCGGCGCGACCCTTGGCGGACTGCTCGCGGTATGGCT GATCGGCGCCTGGGGCTGGCGCTCGGTGTTCGTCTTCGGCGCTGGCCTGACCCTGGCGGTGATCCCGCTGGTCTGCCTGTGCCTGCCGGAGTCGCTGGAC TTCCTCCTGGCGCGCCGGCCGCCGCGGGCGTTGCAACGGGTCAACGCGCTGGCCCGGCGCCTGGGCCGCGCGGCGCTCGCGGAACTGCCGAGCCCGCCCG GTGGCGGAGCGGAGCACGGTAGCCGCCTCGCCCGGTTGCTTTGCGTTGCCCAGCGACGTACCACGCTGCTGCTCTGGGCGCTGTTTTTCCTGGTGATGTT CGGCTTCTACTTCATCATGAGCTGGACGCCGAAGCTGCTGGTCGCCGCCGGCCTGTCCACCGCCCAGGGCATCACCGGCGGCACCCTGCTGAGCATCGGC GGGATCTTCGGTGCCGCCTTGCTCGGCGGGCTTGCCGCGCGCTTTCGCCTGGAACGGGTGCTGGCGCTGTTCATGCTGCTTACCGCCGCTCTGCTCGCGC TGTTCTCGCTGAGCGCCGGGCTGCCCGGCGCGGCCTTGCCGCTGGGACTGCTGATCGGGCTTTGCGCCAACGCCTGCGTGGCCGGCCTGTATGCCCTGGC GCCGAGCCTCTACGACGCTTCGGTGCGTGCCACCGGGGTCGGCTGGGGGATCGGCGTCGGTCGCGGCGGGGCGATCCTCTCGCCGCTGGTGGCCGGGCTC CTGCTCGACGACGGCTGGCAGCCGCTGTCCCTCTATGGGGCGTTCGCGGCGGTGTTCGTCGCCGCGGCCGCCGTGTTGCCGCTGCTCGGTGCGCGGCGTC GCGAGCGCTCGCCGACGCTGGGAGACGCTGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCCGCCGGCGTTTCAGCGTTGGGCGGCGATGATTGCCTCGGCGATGGTGGTGCGGAACCAGTTCAGCGCCGCCGAGCGTTCGCTGCTCTCGTGCCAGT GCAGGGAGACGTCGAACGGCGGCAGGGTGAAGGGCAGTTCGAGCATGCGCATGCCGCCTTCGGCGACGAAGCGATAGGCGATCTGCGCCGGCAGGATGGT CAGCAGCTCGGTACCGGGAATGATCTTCGGCAGCACCGAGAAGTGCGGCACCCGCAGGCTGATGCGGCGCTGCACCTGCATGGCCTCGAGCACGTCCTCG GCGATGCCGTGGCCGGAGGTACGGGTCACCACGATGTGCCGCTCGGCCAGGTACTGCTCCAGGCTCAGGCTGTCGCCGATCCGCGGGTGGCGGTCGCTGA GCAGGCACACGTAGCGCTCGTGCAGGACCCGCTGGCTGCGCGCGCCGGGCACCGGCTGGCGGCAGATCGCCGCGTCGACCTTGGCGCTGCTCAGCCAGGC
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| Amino Acid Sequence |
>MFS transporter
MNRDLRRALDDEPMRPFQWLAVAVCIVLNLIDGFDVLVMAFTASSVAAEWNLGGAEIGLLLSAGLFGMAAGSLFIAPWADRWGRRPLILACLALSGLGML ASALSQAAWQLALLRGLTGLGIGGILASSNVIASEYASRRWRGLAVSLQSTGYALGATLGGLLAVWLIGAWGWRSVFVFGAGLTLAVIPLVCLCLPESLD FLLARRPPRALQRVNALARRLGRAALAELPSPPGGGAEHGSRLARLLCVAQRRTTLLLWALFFLVMFGFYFIMSWTPKLLVAAGLSTAQGITGGTLLSIG GIFGAALLGGLAARFRLERVLALFMLLTAALLALFSLSAGLPGAALPLGLLIGLCANACVAGLYALAPSLYDASVRATGVGWGIGVGRGGAILSPLVAGL LLDDGWQPLSLYGAFAAVFVAAAAVLPLLGARRRERSPTLGDAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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