Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_26_a1, TC72_RS14660 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACGCAGGACGAAGATCACGTACTTGATGGAAACGACCCAGACCAGCGACCAGAAGATCAGCGAGAGCACGCCAAGGACGCCATCGTGGTTGGCCTGCA CCCCGTAGCCGCCGATGAAGACCTCTTTCAGGGTATACAAGGGACTGGTGCCAATATCCCCATAGCAGACTCCAACCGCCCCGACCATCAGGCCGATGGC AGAGCTGGAATGCCCCTCCGAAGTCTCCTCGGCACGCGTCGCTGCATCACTCATGAAACGCTTTCCCCCGGAAAAATTCGGCAAATGCTGCGCCCATGCC GTCCGCGATGCAAGCGCCGAGGCCACGGACTGCTATGACTATAGAAGGCCGGGGAGCCGATTGCCGAGCGCCCGCGGTGAGTTTTTCCAGGGCCGGAAAA GAGCTGCACGGGAGACTGGAAAAGCCGCGGCGCTGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAGCAAGCGCGCCCGCCTACCGAGGTTAGCC
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| DNA Sequence for Gene |
>TC72_RS14660
|rimO
ATGTCCACCCCCACTCCCAAAGTCGGCTTCGTCAGTCTTGGATGCCCCAAGGCGCTGGTCGACTCCGAGCGCATCCTCACCCAGCTGCGCATGGAAGGCT ATGAGGTCGTTCCGACCTACGAAGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGGCGA AGCCATCGCCGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACGCGATCCGCGACGTCCATCCCAGCGTGCTGGCGGTCACCGGC CCGCAACAGTACGAGCAGGTGGTTACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAACACAACCCGCTGGTCGACCTGGTCCCGCCGCAAGGCGTCA AGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAG CCGGCCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCCCAGGACACCAGCGCCTACGGCGTG GACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCGTGTGGGTTCGCC TGCACTACGTCTACCCGTACCCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTTCCAGCACGCCAG CCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAGCAGTGGCGCGAGATCTGCCCGGAACTGACCATCCGC TCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCGTCGGCTGCTTCC AGTACTCCCCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGGGAACGCTTCATGGCCCACCA GCAGGCGATTTCCGCCGCTCGCCTGCAGCTCAAGGTGGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTCGGCCGCTCCTGG GCCGACGCTCCGGAAATCGACGGCAACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATGCCGACGAGTACG ACCTCTGGGCCGAGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTCCCTGAAGAGCCCCGCCCCGCGGGGCTTTTCATCGCCAACCGTTCCGGAGAGCACGATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTGC TGGATCTTCCCGATGCACATCTGGCCGAACTGGCCGCCCCGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAGA CGGCTTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGTCGCGACGAGTCGCGTCCGCTACCGCCGCTG GAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCCTTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGACAGCGTCGACTTCC CGGTCTCCAAACCCGAGCTGAGCGCCCTGTTTCGCAAGCCCGGCCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGTAACTTCCTCAAGGGCCT
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTPTPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVEEHAIRDVHPSVLAVTG PQQYEQVVTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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