Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_23_a1, TC72_RS26195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
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| DNA Sequence for Gene |
>TC72_RS26195
TACGGGGATGTGTACAGCCTCGGCAGGCTGGATATCGCCCGCGACGATGCCGGCAGCCATGCCGCCAGCCTGGAAAATATCTCGGCGAATATAGAAAGCT CTGGAGATACCAGGATTTCTGCCAGCAATATCGTAAATAAGAAAGAATTTTTTGAGGTGTCATCTGAGCTTGTTTCCAGTGCAATCGGGATGCGGAGAAC GTCGCCTGGTAACGGCCACATGGTCTTGCTGGAGAATTACGAGTCGAGTCTGAAAGCTGATGCTCCATCCGCAAGTATTTCTGCAGGAGGGAGTCTCTAT GTGCTGGGCTCAGATTTTCTCAATTCGGCATCCTATGTAACGGCTTCGAAAGACATCGATGTGCGTGTAGACAAATTTACCAATCAGGGCGCTACATTAG GAAAGTACTCGGTAAGGAGATCCTTCGAACACCCTTGGCTGCGCGAAGACAAAAGTATTCTGAGTTTTTGGCGCTCGGTAATGGAATATAATGCTTCGAA TGATTCGCAATATCTTCCTTCCAGAAGAGGCGGGGCTCCAAATACCGTCAGTGGTGGATCCATACATTATTGGGATGAGAACTGGAATGAGTCGATTGCC TATACTGGTTGGAAAATGGGAGGGACGGCTAACCGAGAAACCCATGTGTTGATTGGTTGGCAAGATTACTGGACCTTTATTACACCTAGTAATTTTTATG GAATATTTCCTGAGGCGAAATATACAGAAGGTGTAAGGGTGCCACTTCCTGATGCAATAAGGAATGTCAATTACTTTGATGTTCTTACTGTTTCGGATGG TGCACAGAAAGGTGTGGCTGATGCCGTTGTGCAGGCGGCGGGAAAGGTCAGTATTACGGCTAGCCAAGAGATAAATAATAGCGTCGTTCGAGAAGGACTG CCGGTATCGTCCGAGCTAGGGATAGCCTTGAATACACAAGTGTCGGCTAATACCTCATCTATTATTGTCAACTTGAACAGTCAACTGCCACCAGACTTGG CAAGGCAACAGATCAATCCTCTCACCCTACCGGGCTTCAGCCTGCCTCAAGGCCAGAATGGGCTCTTCCGCCTGGCGTCCCAAGGAGCCCAGGTGAACCA GGCAAGTGGTGCTCTGAAATCCGCCAGCGATCTCACCCAGAGCGGCCATGGCGTATCTGTATCCGCACAGACAGGCAGTGGCGCAAGTGGCTGGAGTACC CAGGCGCGTCGTGTCGGCGATGATCGGGTCACCTCGCTTACCGGTTCCGCCTATCAGGGCCGGGTAGCTGAGGCTATCGATGCGCTACGGGCTTCCGCGC CAATCTCGGGCGACGGGGGAAACACTGGCCGTTTCCAGGCCGGTGAGCACCAGGCGACCACGGGACTGGGTGGACTCGTCGAGGGCAATGCATCGGGTCA CAGCGGCAATGGCGTCATCCTCGCCGATCTGCGCGGTGGTCTACCCTCGTTCTCAAGCCTTCCCGCGGCTGATCGTATTCAAGGCACAGCGCCCGGTCAC GATGGGAATGGAACTATTCTCGCCAATTGGCAGGGTGCGCAGGCGACGGTCCAGGCCTCGCCTTCGACAGTGCGTGTAGAGGGGGTAGTCTCCAGTCCAG GTGGCAATGGCAGCATCCTTGCCGGTCTGCCGGCTGAGCAGTCGTCGGTGCAGGCACTGCCTTCGGCCGTTAGGGCTCAGGGCAGCCTGCCTCGCCTCGA AGAGCGGAGCGCCGTTCTTGCCGAGCCTCCGGTTGGGCAGCCGGCGTTGCAAACCCTGCCGTCGGTTGCGCGCGTTGAGGGCGTGCCCAGCAATGCCACA CCGAGCAACAGCCACAAGTATCTGATCGAGACCAACCCGGCGCTCACCGAGCTGAAGCAGTTCCTCAACTCGGACTACCTGCTCGGTGGCCTGGGTATCA ATCCGGACGATAGCAAGAAGCGCCTGGGCGACGGTCTATACGAGCAGCGCCTGGTACGCGAAGCGATCGTCCAGCGTACGGGGCAGCGCTTCATCGCCGG ATTGAACAGCGACGAAGCGATGTTCCGCTATCTGATGGACAACGCCATCGCCAGCAAGGACGTATTGGGACTGACCCCTGGCGTCACCCTCAGCGCCGCC CAGGTGGCCGCGCTGACCCACGACATCGTTTGGCTGGAAGAAGTCGAGGTGAATGGCGAGAAGGTCCTCGCCCCCGTGGTCTACCTGGCCCAGGCCGAGG GGCGGTTGGGCCCGAACGGCGCGCTGATCCAGGGGCGCGACGTGAACCTGATCACCGGCGGGGACCTGAGGAACGCCGGTACCCTGCGCGCGCAGAACGA CCTCAGCGCGACAGCCGGCAACATCGACAACAGCGGCCTGATCGAGGCCGGCAACCGCCTCGACCTGCTGGCCAGCGGCTCCATCCGCAATGACCAGGGC GGCATCATTGCCGGGCGCGAGGTAAGCCTCTCCGCCCTTACCGGAGACGTCATCAATGAACGGACGGTGACCCAGCACCAGTCCTCCTACAGGGGAACCG GTACCACTGAGGCATTTGCCGATAGCGCCGCGCGTATCGAGGCTGCGCAGAAGCTGACCGTTTCGGCAGGACGCGATGTAGCCAATATTGGCGGTGTCAT CGACAGCAAGGGCGACCTCGCCTTGCAAGGCGGCAGGGATGTCCTGGTTTCGGCTGCGGTAGCGGAGCGGGGCTGGACGGCAGGAAGCCAGGCATACCAG ACCCAGACGACCCAGATGGGCGCCGAGGTCGTGGCGGGGCGCGATATCAGCGTCAGCGCCGGACGCGATATCAGCGTCGTGGGCAGCCGCATCGACGCTC GTCGCGACGTGACATTCGAGGCGGGTCGCGATGTGGGCCTGGTCGCGGCTGCCAACGAAGAGCATGCCTATGGCAAGACCAAGAAGGTCACTTTCCAGGA CGACAAGATCACCCAGCAGGCCACTCGCGTGGACGCTGGCGGCGACCTGGCGATCAATGCCGGACAGGACCTGCGGCTGGTCGCGAGCCAGGCCAGCGCC GGCGACGAAGCCTACCTGGTGGCCGGCGACAAGCTGGAGCTGCTGGCCGCCAACGACAGCAGTTACTACCTCTACGACAAGAAGAGCAAAGGCAGCTTCG GTAGCAAGAAGACCCGGCGCGACGAAATCACCGATGTGACGGCAGTGGGCAGCCAAATATCCAGCGGCGGCGACCTCACCCTGCTCAGTGGCGGCGACCA GACTTACCAGGGCGCGAAGCTGGAATCGGGCAACGACCTGGCCATCGTCAGCGGCGGCGCGGTGACCTTCGACGCGGTGAAGGACCTGCACCAGGAGAGC CACGAGAAGAGCAAGGGCGACCTGGCGTGGCAGTCGTCGAAGGGCAAGGGCCAGACCGACGAAACCGTACGCCAGAGCCAGCTCGTCGCCCAGGGCAACC TGGCGATCAAGGCCGTGGAAGGCCTGAAGATCGACCTCAAGCACATCGACCAGAAGACCGTGAGCCAGACCATCGACGCGATGGTGCAGGCGGATCCGCA ACTGGCCTGGCTGAAGCAGATGGAGCAGCGCGGCGATGTGGATTGGCGGCGCGTGCAGGAACTGCATGACAGCTGGAAGTACAGCAACTCCGGGCTGGGC GTCGGCGCGCAGTTGGCGATAGCGATCGTCGTGACTTACTTCACGGCGGGCGCAGCCAGTGGGGCGATTGCAACGGCCGGGGCCGGAACCTCCATGGCAG GCGCGACCGCAGCCGCTACCGCTACGACTTCGGCGGGCTGGTTGAACGCGGCAGGTACCGCGGCGCTCAGCGGCGTGGCCAGCAATGGAGCGATCAGCAC CATCAACAACCGGGGAAACCTGGGGGATGTCGTCAAGGACGTGACCTCCAGCGATGCGCTGAGGGGCTATGTAGTCGCTGGCACGACTGCGGGGCTGACT GCCGGCGTCTACGACAAATGGACCTCGACCCAGACCGGCACCTCGACCGCTCTACCGAACACCGGGGCCGTGGCGCCCGCCGCAGGGTTGGGCACCTGGC AAGGCGTGGGCCAGTTCACCTCGAACCAGTTGCTGCAGAATGGTACTTCGGTGCTGTTGGACCGGGCGCTGGGCGGCAAGGGCAGCCTGGGCGATGCGTT GCAAAACAGCCTGGCAAATGCCTTTGCGGCCTACGGCTTCAAGCTGATTGGCGACACCACCCATGGCGTACTGGACGACGGCAGCCTCGGCAAGATCGGC TTGCACGCCCTGATGGGAGGTCTGGCCGCCGAAGCGGTCGGTGGCGATTTCCGTACCGGAGCCCTGGCTGCGGGAGTCAACGAGGCGCTGGTGAATAGCC TCGCCAAGCAATACGCCAGCCTGCCCATCGATGACAAGAAGGGCCTGCTGATCATGAGTTCGCAGTTGATCGGCGTGCTGGCGGCTTCGACGCAGGGCGA TGCGGACGCCAAGAGCTTGCAGACGGGAGCCTGGGTGGCGGGGAATGCCACCCAACACAACTACCTCAGTCATTGGCAGGAGGAGAAGAAGCGGCAGGAG GTCGATGGCTGCAAGGACAAACCGCTCTGCAAAACCGGAATAGAAGCCAAATGGGCAATTATTTCGGCCCAGCAGGATGTCGGTATCGTCGTAGGTGTTG GAGGAGGCATTGGTCTTTCGACAGCTGAAACCGCAGTGGGTGTTTATGAGCTGGTCAAGAACTGGAGGGAAACCTATGCAGCTCTGGAGCAGTTGGCCAC TTCGCCAGAGTTCCGGCAGCAGTTTGGCGATAACTACCTGAAGGGGCTGGAGGAGCGCGCCGCATTCTTGACCCAGGCATACGAGGATGCCGGCTGGCAA GGTTCGGTCACAGCTGGTGTCGAGGGCGGTAGGTTCGCTGCGGAACTTGTTGGCGTTCTGACGGCAGTGAAAGGTGGCGCGCAGATAACCGCCAAGCTGC CAACAGCAGCCAAGAACCTGGTCAACGCGATTGCGGAGTCACCTGTTTCCGGTAGTATGAGTTCGCAGCTCGGGGCAGTGGGGGACTTGGGTAGGCTGGG TGGGGGTGCAAAAGCGACTGCGACGGTGATCGATACCGCTCCGATGGCCCAGCGGGTCATGGATGTTCGAGCTGGATTGCCGTCTAATTTAAGGCGCAGT GGTAATGTAGCTATCGCAGAAATAGATATTCCCGGAATACCTAGGCAGATGGCTGCGCACAGCCAAGTCTCTGATGCCGGTAAAGGGCTTATTGGCTCTG GAAGTGGAAATTTTGTGGCTCAATCTGTACCCAACAAGGCCGGAGATATGGTTTATCGGGGAATAGATACGGAATACAAAATACTAGACAATATTGCTGA TCAATTAGGAAGCAACACCTCCGCAAGAGGGACTGTAAATATTCTAACGGAGAAAGCAGCTTGCGCAAGTTGTCTGAACGTGGCTGAGCAGTTTAAGGCG AAGTATCCCAATATCACAGTTAATATTCTTGATAATCAGGGCGTTATGCTCCGTCCGCCGAGGAAGACGCCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAAGAACGTGTGACTTATGGAGAAATCCGGGCTTGGTTTCTGGGCAGCTATTACAACTATTGCAGGGTCAAACTCAACCACCAAAGCCCATGGGTTGA GGGAGAAAGTGAAGTAGGCTATGCCTACAGTGAGCTTGAAAACTCCTTTGATTTGCCTATTGAGAAATTAATGTTGGAAGTTTTAGCGCTTATTCTCTCG GCGGGCAGGTCTTCGGATAAAGTTAAGGGATATCATCTTGATATTATTCATGGATTGCTAAAGGAGATCAAGCTGTCTTCTGTTCTGGATGATTTGCCTT CTGATGAGGCAGCAGAGCTAAGAGACGATCTCAGAGTGTTAGGTCTTTATTAATTAGCCCAGGGCGGGTTATTTACTTGGTGCAAAAGGAACTGCTAATT TCCCGGAAGGGATGAGCTTCAATCCCAACATCAAGAATCACCTCAGCAATTTTGATGGCCTGACGCAGAAGAGTGGGATTATAGCATAAAGGGGACAGAT
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| Amino Acid Sequence |
>hypothetical protein
YGDVYSLGRLDIARDDAGSHAASLENISANIESSGDTRISASNIVNKKEFFEVSSELVSSAIGMRRTSPGNGHMVLLENYESSLKADAPSASISAGGSLY VLGSDFLNSASYVTASKDIDVRVDKFTNQGATLGKYSVRRSFEHPWLREDKSILSFWRSVMEYNASNDSQYLPSRRGGAPNTVSGGSIHYWDENWNESIA YTGWKMGGTANRETHVLIGWQDYWTFITPSNFYGIFPEAKYTEGVRVPLPDAIRNVNYFDVLTVSDGAQKGVADAVVQAAGKVSITASQEINNSVVREGL PVSSELGIALNTQVSANTSSIIVNLNSQLPPDLARQQINPLTLPGFSLPQGQNGLFRLASQGAQVNQASGALKSASDLTQSGHGVSVSAQTGSGASGWST QARRVGDDRVTSLTGSAYQGRVAEAIDALRASAPISGDGGNTGRFQAGEHQATTGLGGLVEGNASGHSGNGVILADLRGGLPSFSSLPAADRIQGTAPGH DGNGTILANWQGAQATVQASPSTVRVEGVVSSPGGNGSILAGLPAEQSSVQALPSAVRAQGSLPRLEERSAVLAEPPVGQPALQTLPSVARVEGVPSNAT PSNSHKYLIETNPALTELKQFLNSDYLLGGLGINPDDSKKRLGDGLYEQRLVREAIVQRTGQRFIAGLNSDEAMFRYLMDNAIASKDVLGLTPGVTLSAA QVAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLGPNGALIQGRDVNLITGGDLRNAGTLRAQNDLSATAGNIDNSGLIEAGNRLDLLASGSIRNDQG GIIAGREVSLSALTGDVINERTVTQHQSSYRGTGTTEAFADSAARIEAAQKLTVSAGRDVANIGGVIDSKGDLALQGGRDVLVSAAVAERGWTAGSQAYQ TQTTQMGAEVVAGRDISVSAGRDISVVGSRIDARRDVTFEAGRDVGLVAAANEEHAYGKTKKVTFQDDKITQQATRVDAGGDLAINAGQDLRLVASQASA GDEAYLVAGDKLELLAANDSSYYLYDKKSKGSFGSKKTRRDEITDVTAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFDAVKDLHQES HEKSKGDLAWQSSKGKGQTDETVRQSQLVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKQMEQRGDVDWRRVQELHDSWKYSNSGLG VGAQLAIAIVVTYFTAGAASGAIATAGAGTSMAGATAAATATTSAGWLNAAGTAALSGVASNGAISTINNRGNLGDVVKDVTSSDALRGYVVAGTTAGLT AGVYDKWTSTQTGTSTALPNTGAVAPAAGLGTWQGVGQFTSNQLLQNGTSVLLDRALGGKGSLGDALQNSLANAFAAYGFKLIGDTTHGVLDDGSLGKIG LHALMGGLAAEAVGGDFRTGALAAGVNEALVNSLAKQYASLPIDDKKGLLIMSSQLIGVLAASTQGDADAKSLQTGAWVAGNATQHNYLSHWQEEKKRQE VDGCKDKPLCKTGIEAKWAIISAQQDVGIVVGVGGGIGLSTAETAVGVYELVKNWRETYAALEQLATSPEFRQQFGDNYLKGLEERAAFLTQAYEDAGWQ GSVTAGVEGGRFAAELVGVLTAVKGGAQITAKLPTAAKNLVNAIAESPVSGSMSSQLGAVGDLGRLGGGAKATATVIDTAPMAQRVMDVRAGLPSNLRRS GNVAIAEIDIPGIPRQMAAHSQVSDAGKGLIGSGSGNFVAQSVPNKAGDMVYRGIDTEYKILDNIADQLGSNTSARGTVNILTEKAACASCLNVAEQFKA KYPNITVNILDNQGVMLRPPRKTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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