Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_23_a1, TC72_RS18510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
DNA Sequence for Gene
>TC72_RS18510
TACGGGGATGTGTACAGCCTCGGCAGGCTGGATATCGCCCGCGACGATGCCGGCAACCGTGCCGCCAGCCTGCGCAACCTTTCCGGGGTGATCGAGAGCG GCAAGGACTTCAGCCTGCGTGCCAGCCTGATCGAGAACCGTCGCGCCGTGCTGGAAAGCAAGTCGGGCCTGTACACCGCGAAGATGGAGCAGACCGCCTG CATCGAAGGCGTCAACGCGGGCGACTGCAGCGGCAAGCGCAACGCCATCTGGACCATCACCCAGCGCGACAAGACCGAGGTCACCGCCAGCAGCGCCATG GGGCAACTGCTGGCTGGAGGCGACTTCGCCATCGACGGCGGCACCCTGAACAACCTTTCCAGCCTGATCGGCAGCGGCGGCAACCTCACCGCCAACCTCG AAGTCCTCGACAACCAGGGCCTGGAAACCGGCGAGCTGGAAACCATCCGCGTGCTGCGTACCGCTCGCGGCGGCGATATCGGCGGCATCGACCAGAAGTC GCGCAACTTCACCAACCTCTACTGGTACCAGAGCGCCAATTTCGACCCGGCGCGCGCGAGCGAGATCCCCGCCGCGCTCAACGCGATCCTCAGCGACTGG TCCTTCGAGTACGAATTCCCGAGCAAGGGGCCGACCCCGATCAGCAGTGGCGACCAGTCCTACGCAGCGGTGATCCAGGCCGCCGGCGACGTCACGGTCA ATGCCAGCACGCGCATCGACAACGGCGTCACCCGCCCCGGCTACACCTTCGTCGGCAGCGGCCGCCAGGTGGGCGACAGCGCGGTGGGCGGCAGCGGGGT TTCGGTGGTCGTGCCGCTGACCTCGCAACTGCCGCCCGACCTGGCGCGGCGCCAGGTCAACCCGGTTACCCTGCCCGGCTTCAGCCTGCCCCAGGGTGAC AACGGCCTGTTCCGTCTCAGCTCGCGCTTCGCCGAGGACGGCAATGGCAGCGCCGCGCTCGGTGCCGGCGCCGACCGCACCCAGGGCGGTAGCGGCGTCT CGGTCGGCCAGCAAGGCGCCGGCAACGTCGCCGGTACCTGGCAGGGCCAGGGCGTGCGAGTCGACGGCCTGGCTGGCGCGGCCAACGTCCAGGGTCAGGG CGGCAGCACGCTCGGCGGTAGCCTGCCGGGCGTCGCCCGGGTCCAGGGCGTGCCCGGCAACGCCACGCCGAGCGCCAGCCACAAGTACCTGATCGAGACC AACCCGGCGCTCACCGAACTGAAGCAGTTCCTCAACTCGGACTACCTGCTCAGCGGCCTGGGCATGAACCCGGACGATAGCAAGAAGCGTCTCGGCGACG GTCTCTACGAGCAGCGGCTGATCCGCGACGCGGTGGTGGCGCGCACCGGCCAGCGCTACATCGACGGGCTGAGCAGCGACGAGGCGCTGTTCCGCTACCT GATGGACAACGCCATCGCTTACAAGGACAAGCTCCAGCTGCAACTGGGCGTAGGTTTGAGCGCGGAGCAGATGGCGGTGCTGACCCACGACATCGTGTGG CTGGAAGAGGTCGAGGTGAACGGCGAGAAGGTCCTCGCGCCGGTGGTCTACCTGGCCCAGGCGGAGGGTCGGCTGGCACCCAACGGTGCGCTGATCCAGG GCCGCGACGTGAAGCTGGTGAGCGGCGGCGACCTGCATAACGTCGGCACCCTGCGCGCGCGGAACGACCTCTCGGCGACGGCCGACAACCTCGACAACAG CGGCCTGATCGAGGCCGGCAAGCGCCTCGACCTGCTCGCCGGCGACTCGATCCGCAACCGCCAGGGCGGGGTCATCGCCGGGCGCGATGTGAGCCTCACC GCACTGACCGGCGACGTGATCAACGAACGCAGCGTGACCCGCTACGACAGCGCGCTCGACGGCCGCACCTGGGAGCGCAGCTTCGCCGACAGCGCCGCGC GGGTGGAGGCGGCGAACAGCCTGAACGTCCAGGCCGGACGCGACATCGCCAACCTCGGCGGGGTGCTGCAGAGCCGCGGCGACCTCAGCCTCGACGCCGG ACGCGACGTCACCGTCGCCGCCATCGAGGATCGCCAGGGCCAGACCCGCTGGAACACGTCGCGGCTACAGAGCGTGACCCAGCTCGGCGCCGAAGTCAGC GCCGGGCGGGACCTGAACGTCAGCGCCGGGCGCGACCTCAGCGCAGTGGCCAGCGCCCTCGAAGCGCGCCGCGACATCGCCCTCTCCGCCGGGCGCGACG TGACCCTGGCGGCGGCGGCGAACGAGGAGCATGCCTACAGCAAGACCAGGAAGGTCACCTACCAGGAAGACAAGGTCGCCCAGCAAGGCACCCGCGTGGA CGCCGGCGGCGACCTGGCGATCAATGCCGGACAGGACCTGCGCCTGATCGCGAGCCAGGCCAGCGCCGGCGACGAGGCCTACCTGGTGGCCGGCGACAAG CTGGAACTGCTGGCCGCCAACGACAGCAACTACTACCTGTACGACAAGAAGAAGAAAGGCGACTTCGGCCGCAAGGAAACCCGGCGCGACGAAGTCACCG ACGTCAAGGCGGTGGGCAGCCAGATCAGCAGCGGCGGCGACCTCACCCTGCTCAGTGGCGGCGACCAGACTTACCAGGGCGCGAAGCTGGAATCGGGCAA CGACCTGGCCATCGTCAGCGGCGGCGCGGTGACCTTCGAGGCGGTGAAGGACCTGCACCAGGAGAGCCACGAGAAGAGCAAGGGCGACCTGGCGTGGCAG TCGTCGAAGGGCAAGGGCCAGACCGACGAAACCGTGCGCCAGAGCCAGATCGTGGCCCAGGGGAATCTGGCGATCAAGGCCGTGGAAGGGCTGAAGATCG ACCTCAAGCATATCGACCAGAAGACCGTAAGCCAGACCATCGACGCGATGGTGCAGGCGGATCCGCAACTGGCGTGGCTGAAGGAGGCCGAGCAGCGCGG GGATGTGGACTGGCGCATGGTGCAGGAGGTGCACGATAGCTGGAAGTACAGCAACTCGGGCATGGGGCCGGCGACGCAGATCGCTGTCGCCATCGCGGCG GCAGCCATCGGTGGCATGGCGGCAGCGGGAGCGCTCAGTGGTGCAGGAGTGGGTGCCAGTAGCTTCGCCATGGGCGCAGGAGTTGGTGCGGCAGGAAGCC TGTCGGGCACGGCAGCGGTCAGCCTGATCAACAACAAGGGCGATCTCGGGAAGGTGCTGAAAGACAGCTTCAGTAGTGACAGTCTGAAGCAGATTGCTAT TGCGAGCCTGACCGGGGGGCTGACGGCTGAGTACTTCGACGGGATTCTTCAGACCAAGACTGATCCGCTTACTGGAAAGGTCACGGTAGACCTCAGCAGC CTATCTGGTGTTGGTCGCTTCGCTGCCAATCAGGCGATGCAGAACGCTACATCCACTGTACTGAGCCAGGCCTTGGGCCAGGGCGGGAGCCTGAACGAGG CGCTGAAGAGCGCGCTCTACAACAGTTTCGCGGCGGCAGGTTTCAACTTCGTCGGCGATATCGGCCAGGAATACAGCCTGAAGCCAGGCGATCCTTCGAT GGTGACCATGCACGCCCTGATGGGTGGCCTGGCGGCGCAGGTCAGCGGTGGCGATTTCGCCACGGGCGCCGCGGCGGCTGGCGCCAATGAAGCGCTGGTG GCCAAGCTAGACCAGGCCTTCAAGAGCTTGAGCCCTGAGAACCGTGAAGCCATGGTCACTATGGGGTCGCAATTGGTTGGTGTTCTGGCTGCGGCGGTAC GCGATCCTGATGTGACAGGCAAAGCTCTGGAAAGCGCTGCTTGGGTAGCGAAGAACTCGACGCAATACAACTTCCTCAACCATCAGGATGTGGCCGATCT GGATAACGCCTTGCAGAAATGCAAGTCCCAGGGAAATTGCCGTCAGGTAGAGGAAGAGTTCAAGGCGCGTAGCGACGAGAACCGGCGGAGGTTGAATGGC TGCGTGGCTGCGGGTAATTGCGCGGAGATTCGTGCGGAGATCGATGCGGGGTCTACGGCTCTCAACGAGCTGGTGGCCCGGCAGGAAACAGCTAATCCGG GAGGAAGTGACAGCGATATAGCCTACGGTTTCCTGATGGGCCGAAACGTCGTCGACTGGACGACGGCTGGTCAGTTGCACCTGGAGCAGACCGCCAACCT CTGGTGGAACGGCAATCCACAGTGGCAGAAGGAAGTCGGTGCATACCTGGACCAGACGGGGTTCAATCCGTTCGGAATCGGCGTTCCGGCAATGGGCGGT GCCGCTGGCAAGGTATCGGCCAAGGCGCTCATGAATGCGCTGAAGGCGGGAGAGTTGCCCAAAGGAGAGGTGGCCCCAGGAAAGGCTAATCTGCCTACCA TTGGGGCGTTGGCGGATGCTGAGGCGGGGATGCCTTATACGCATCCGGTCAAGCCCGGTGCAAAAGGGGCTGTCATTCCCAAAGGTTTCTCGAATGCCGA TGATTTCGCACGCTTTGGTACAGATGCGCGAGAGGGTTTAGCGAAAGCCGGCTATGGGAACGTAGAGCCCATTCTTCAAGGGAGTGCTATAACGGGGCAG AGTTTCAAGACTGGACAAGCGTTTGATGTTGGTAGGGTGAGTGACTTCGATATTGCCTTGGCAGGCTCTGAGTTGTTGCAGCGTGCACAGTCGCTAGGAA TAGGTTTGAGAAGCGGCGGTACTCGTACTGGTCCTCTGAGCGGAAGAGATTTGCAAGCACTTGGATTAAAAGATCTAGCTAGAAAGCTAAGTGCACAAGC AGGGCGTGAAGTTAACTTTATGATTTATGATTCTGCGGCAACGGCTGCAAGCCGCGCTCCGAGCTTGGTACTTCCAAAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTGCATATGACTTGTACGGAACAAAAAATCTCAGCCTTTTTCTGGCAAGAGAGCATATAGAGAAAATTTTTGGAGTGTCTCTTGATGAAAGAAATAGTTC TTATCAAGGAGGGGATTACTACATGCTTGGTAGTAATGATTCGGAGAATTTTATTCTGAAAGCCAATCTTGACCCTCTTGATGATGAACCAGTAGAGTTA AATTTTCCTGACTACCCTATTTTGCTCTATATAAACGCCACGACACGTTCATCTGCTATAGAAGGGGTAATCAAGAAGGGTGCATGCTTTAAGCTGCTCA GGCATGAAATGTTCTAGGAATGAAAGAACAAAGGGGACAGATTTGAATGGCACTTACTTAACCCTTTTCGGGTGACCGTGTTTCTTGATCGCTGCCCGAG CAGATTGACGTGTACAGGTCAGTAATGGGTAGGGCTTTGGCCTTCGCTTGAGGGCTCTGGGTTCAACTCGCCCGGAGCGATTGCCGACACGCTGTTGCGC
Amino Acid Sequence
>hemagglutinin
YGDVYSLGRLDIARDDAGNRAASLRNLSGVIESGKDFSLRASLIENRRAVLESKSGLYTAKMEQTACIEGVNAGDCSGKRNAIWTITQRDKTEVTASSAM GQLLAGGDFAIDGGTLNNLSSLIGSGGNLTANLEVLDNQGLETGELETIRVLRTARGGDIGGIDQKSRNFTNLYWYQSANFDPARASEIPAALNAILSDW SFEYEFPSKGPTPISSGDQSYAAVIQAAGDVTVNASTRIDNGVTRPGYTFVGSGRQVGDSAVGGSGVSVVVPLTSQLPPDLARRQVNPVTLPGFSLPQGD NGLFRLSSRFAEDGNGSAALGAGADRTQGGSGVSVGQQGAGNVAGTWQGQGVRVDGLAGAANVQGQGGSTLGGSLPGVARVQGVPGNATPSASHKYLIET NPALTELKQFLNSDYLLSGLGMNPDDSKKRLGDGLYEQRLIRDAVVARTGQRYIDGLSSDEALFRYLMDNAIAYKDKLQLQLGVGLSAEQMAVLTHDIVW LEEVEVNGEKVLAPVVYLAQAEGRLAPNGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLT ALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAIEDRQGQTRWNTSRLQSVTQLGAEVS AGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAGGDLAINAGQDLRLIASQASAGDEAYLVAGDK LELLAANDSNYYLYDKKKKGDFGRKETRRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDLHQESHEKSKGDLAWQ SSKGKGQTDETVRQSQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVHDSWKYSNSGMGPATQIAVAIAA AAIGGMAAAGALSGAGVGASSFAMGAGVGAAGSLSGTAAVSLINNKGDLGKVLKDSFSSDSLKQIAIASLTGGLTAEYFDGILQTKTDPLTGKVTVDLSS LSGVGRFAANQAMQNATSTVLSQALGQGGSLNEALKSALYNSFAAAGFNFVGDIGQEYSLKPGDPSMVTMHALMGGLAAQVSGGDFATGAAAAGANEALV AKLDQAFKSLSPENREAMVTMGSQLVGVLAAAVRDPDVTGKALESAAWVAKNSTQYNFLNHQDVADLDNALQKCKSQGNCRQVEEEFKARSDENRRRLNG CVAAGNCAEIRAEIDAGSTALNELVARQETANPGGSDSDIAYGFLMGRNVVDWTTAGQLHLEQTANLWWNGNPQWQKEVGAYLDQTGFNPFGIGVPAMGG AAGKVSAKALMNALKAGELPKGEVAPGKANLPTIGALADAEAGMPYTHPVKPGAKGAVIPKGFSNADDFARFGTDAREGLAKAGYGNVEPILQGSAITGQ SFKTGQAFDVGRVSDFDIALAGSELLQRAQSLGIGLRSGGTRTGPLSGRDLQALGLKDLARKLSAQAGREVNFMIYDSAATAASRAPSLVLPK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site