Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_23_a1, TC72_RS18495
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTACATCAGCCAGTCGGACAAGGGCGACCTGGTCATCGGCGCCGGCATCGACGGCTACAACGGCTACGGCCAGCGCGGCTCTTACCCGGTGATCGAGCA CACCCTGCAAGCCATCGTCGAGATGTTCCCGGTGCTCTCGCGGGTACGCATGAACCGCCAATGGGGCGGCATCGTCGACACCACCCCGGACGCCTGCCCG ATCATCGGCAAGACTCCGGTGCAGAACCTGTTCTTCAACTGCGGCTGGGGCACCGGCGGCTTCAAGGCCACTCCCGGCTCCGGAAACGTCTTCGCCGCCA CCCTGGCCAAGGGCGAACCGCATCCGCTGGCCGCGCCCTTCTCCATCGAACGCTTCCACAGCGGTGCGCTGATCGACGAGCACGGCGCGGCGGCAGTGGC GCACTGACAAAAGCCGCCCGAAGGGCGAAATCCGCTGCCCCTCGCCCGTCAGGAAGAGGGTGCCGGTCAACCGGCAAGAACAGTTTCCGGAGGCTACAAA
|
|
| DNA Sequence for Gene |
>TC72_RS18495
ATGCTGAATATCTTCTGCCCCCACTGCGGCGAACTGCGTTCCGAAGAGGAATTCCACGCCAAGGGTCAGGCCCACATCCCGCGCCCGCTCGACCCGAACG CCTGCAGCGACGAGGAATGGGGCGACTACATGTTCTTCCGCGACAACCCGCGCGGCCTCCATCACGAGCTGTGGGTGCACGCCGCCGGCTGCCGCAAGTA CTTCAACGTCACCCGCCATACGGTGACCTACGAGATCCTCGAGACCTACCTGATCGGCGAGCAGCCCAGCGTCGTCGCCGACGGTGAGAAGAAACCCGCC GTACAAGGGGAACCGGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCAGATCAATCGCCTGTCCAGCGGCGGCCGCATCGACCGCAACCGCCCGCTGACCTTCAGCTTCAACGGCCAGCACTACCAGGGCTATGCCGGCGACAC CCTGGCCGCCGCGCTGCTGGCCAACGGCGTCGACATCGTCGGCCGCAGCTTCAAGTACTCGCGGGCGCGCGGCATCGTCGCCGCCGGCGCCGAGGAGCCC AACGCGATCCTGCAGATCGGCTCCCGCGAAGCCACCCAGATCCCCAACGTACGCGCCACCCAGCAGGCCCTCTACGGCGGCCTGGTGGCCACCAGTACCA ACGGCTGGCCGAACGTGCAGAACGACCTGATGGGAATCTTCGGCAAGGTCGGCGGCAAGCTGATGCCGCCTGGTTTCTACTACAAGACCTTCATGTACCC GCAGTCGATGTGGATGACCTACGAGAAGTACATCCGCAAGGCCGCCGGCCTGGGCCGCGCGCCGACCGAGGTCGATCCGGACAGCTACGACTGGATGAAC
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit delta
MLNIFCPHCGELRSEEEFHAKGQAHIPRPLDPNACSDEEWGDYMFFRDNPRGLHHELWVHAAGCRKYFNVTRHTVTYEILETYLIGEQPSVVADGEKKPA VQGEPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|