Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_18_a1, TC72_RS09615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCCTGCAACTGCTGGCTGCCCCGGCGCAGCAGGGTGCGCACCCGGGCGAGCAGTTCGACGAAGGCGAACGGCTTCACCAGGTAATCGTCGGCGCCTTGT TCGAGGCCGCGCACGCGGTCCTCTACGGCATCGCGGGCGGTCAGGAACAGCACCGGTACGGTCATCCCGGCGTCGCGCACGCTGCGCAGGATCTGCCAGC CGTCACGGCCGGGCAGCATGACGTCGAGGATCAGCAGGTCGTAGTCGCCGCCCAGGGCCAGTTGCTCGCCCTCGTTGCCATCGTCGCTCAGGTCGACGGC GAAGCCTGCCTCGGCGAGCCCCTGGCGCAGGTACTGGCCGATGCGCGGTTCGTCTTCGACGATCAGCAGTTTCATGTTCATCCCTCGTTACATTTGCCGG CCATGCCGACCTGTTTCTGACAGCATCGTAATCAGTGGGTAACGGGGGCGACAGTGGCCCCCGCGCAGACTACAGGGGAACTCATTCGAGGAGACTTCCC
|
|
| DNA Sequence for Gene |
>TC72_RS09615
ATGCGTACCTTCACTGCCTCCACCCTCGCTTTCCTGCTGGTCCTCGCCCCGACCGTTCCGGCCATGGCCGACAGCGGCGGCGACATCGTCTTCGAGCGCA TGCAGGCCCAGGCCGCCAAGGCTCGTGCCGCGCACCAGGAGAAACTGGCGAAGCAGGCCGAAGCGACGAAGAAGGACAAGGAAAACTGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGCCAGTTCTTCCACCCCCGGCTCCACACGGGATGACGGAGGGCTCCGATCCCGTCTTCACCCGCCACCGGTTCCCTGGTTTCCGGTCGGCGGGTTTTT TATGCCCGTCGGTGGCGCTGGGCGATCTTAGCCTTCGCGGTCCGCAACGGCGGCAAGCTGACAAAGATGTAATGCTCCCGACAGCCAGCCGGCAGGCGCA GCGACACAGGATAGGCGACATCAACCCGATGGAGATTCCCCGTATGTTTCCGCGCCGCCTGCTTCCCGCTTCCCTGATCGTCCTCGGCGTGCTTTTCGGT GCCAGCGCCCAGGCTTCGCCGGCCCACGGCCAGGCCTTCGGCAAGCCGGCCCAGGCCGCGCAGGCCAGCCGCAGCATCGAGGTGGTGCTCGGCGACATGT ACTTCAAGCCGCGGGCGATCGAGGTCAAGGCCGGCGAGACGGTCCGCTTCGTGCTGAAGAACGAAGGCAAGCTGTTGCACGAGTTCAACCTGGGAGACGC
|
|
| Amino Acid Sequence |
>repressor PtrA
MRTFTASTLAFLLVLAPTVPAMADSGGDIVFERMQAQAAKARAAHQEKLAKQAEATKKDKENC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|