Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_16_a1, TC72_RS13890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGAGCAGGGCTTTGGCGTCCATGTCGGGGTTCCGCTGGGGATGGAAAGGGCATCATGGCTGAGGTGGCTTTATTCGTCGAACGATGGCTGGCCCTGC CGGTAGATCGGCCAGGACTTCATGCGCTGCGGAAACGGCCTGACCAAGTGCAGCGGCTTGCAATCAAAAACGCTGGGCTCGCAATCAGCGTGGTTTTGTC CGGAAGCTCGCGAAGGGGCGGCATGGATGAATTTTGAAAGTGGGAGTTCGTTAATGAACCGAAGGTATGCGGCTTCCGTGACTGGCCGGGGTAGATGAGG TGTGCGTTAAGGAAATGACCGTTTGACGCAGGCGCGATTATAAGAGGTGAGAGAGCGCACCTTCTGGATCATCTAAACACGGGATATTGAAGTTGATTGC AGTGTATTGCCGATGCATTGGGGCTTATTGACTGGGAGAGGGTTCTCGAGGTGGGAGTCGCTCAATACATTACACTTTCAAATTAATGTAGGGGCGATCT
|
|
| DNA Sequence for Gene |
>TC72_RS13890
ATGGCTGTCAATGATTACGAACCTGGTTCGATGGTTATTACACATGTGCAGGGTGGTGGGCGTGACATAATCCAGTATATTCCTGCTCGATCAAGCTACG GTACTCCACCATTTGTCCCACCAGGACCAAGTCCGTATGTCGGTACTGGAATGCAGGAGTACAGGAAGCTAAGAAGTACGCTTGATAAGTCCCATTCAGA GCTCAAGAAAAACCTGAAAAATGAAACCCTGAAGGAGGTTGATGAACTCAAGAATGAAGCGGGGTTGCCAGGTAAAGCGGTCAGTGCCAATGACATCCGC GATGAAAAGAGTATCGTTGATGCACTCATGGATGCCAAAGCAAAATCGCTAAAGGTCATTGAGGATCGCCCGGCCAATCTTTATACGGCTTCAGACTTTC CTCAGAAGTCAGAGTCGATGTACCAGAGTCAGTTGCTGGCCAGCCGAAAATTCTATGGAGAGTTCCTGGATCGCCATATGAGTGAGCTGGCCAAAGCGTA CAGCGCCGATATCTATAAGGAGCAAATCGCTATCTTGAAACAAACGTCTCAAGAGCTGGAGAATAAAGCCCGGTCATTGGAAGCAGAAGCCCAGCGAGCC GCTGCTGAGGTGGAGGCGGACTACAAGGCCAGGAAGGCAAATGTCGAGAAAAAAGTGCAGTCCGAGCTTGACCAGGCTGGGAATGCTTTGCCTCAACTGA CCAATCCAACGCCAGAGCAGTGGCTTGAACGCGCTACTCAACTGGTTACGCAGGCGATCGCCAATAAGAAGAAATTGCAGACTGCAAACAATGCCTTGAT TGCCAAGGCACCCAATGCACTGGAGAAACAAAAGGCAACCTACAACGCCGATCTCCTAGTGGATGAAATCGCCAGCCTGCAAGCCCGGCTGGACAAGCTG AACGCCGAAACGGCAAGGCGCAAGGAAATCGCTCGTCAAGCGGCGATCAGGGCTGCCAATACTTATGCCATGCCAGCCAATGGCAGCGTTGTCGCCACCG CCGCAGGCCGGGGTCTGATCCAGGTCGCACAAGGCGCCGCATCCCTTGCTCAAGCGATCTCCGATGCGATTGCCGTCCTGGGCCGGGTCCTGGCTTCAGC ACCCTCGGTGATGGCCGTGGGCTTTGCCAGTCTGACCTACTCCTCCCGGACTGCCGAGCAATGGCAGGACCAAACGCCCGATAGCGTTCGTTACGCCCTG GGCATGGATGCCGCTAAATTGGGGCTTCCCCCAAGCGTAAACCTGAACGCGGTTGCAAAAGCCAGCGGTACCGTCGATCTGCCGATGCGCCTGACCAACG AGGCACGAGGCAACACGACGACCCTTTCGGTGGTCAGCACCGATGGTGTGAGCGTTCCGAAAGCCGTTCCGGTCCGGATGGCGGCCTACAATGCCACGAC AGGCCTGTACGAGGTTACGGTTCCCTCTACGACCGCAGAAGCGCCGCCACTGATCCTGACCTGGACGCCGGCGAGTCCTCCAGGAAACCAGAACCCTTCG AGTACCACTCTGGTCGTACCGAAGCCGGTGCCGGTATATGAGGGGGTGACCCTCACACCGTTGAAGACCGAGCCGGAGTCCTATCCGGGAGTGCTACTGG ACCTAAACGATCTGATCGTGATTTTCCCGGCGGATTCTGGAGTCAAACCTGTTTATGTAATGCTCAGTAGTCCTCTTGATAGTGGTATCTTCACACGGAG GCAACTACAGAAAAAATTTGATAGCCACAAATATGATTTTGGGCTGGGTGAAAAAAGCGCCAACAATGGAACGCTTGCAGAGTTTAGGGATAAAATTCTT GAGCACCTTGCTGATCCTGCAACCGTAGAAAAAGGGACTTACCACTCCGAAGTAAAATCAAAAGTACATTACAATGCCAGGACTAATATTGTTGTTATCA TTGGAGAGGATGGGATGTTTGTTTCTGGGTGGAGGATTGAGCCTGGCACGGATCAATACAATTTTTACATGAAAAATGAGGTGCTTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GATGAGCATGGAAATGATAGATATTGCAAAGAAGCTATTAGCCTCATCGATTGACGGGAAAACCTTCAGCGAAGAATTTTTTAAGACTTGGAGGTCCGAG CGCGATTCAGGGGTGCTGGCCCAAGATGATGCATCGCTTGGGAGATGCTTGAGTTTAATGTTTGGTCTGGCCGACAGCTTTACCGAGGGAAAGAAAGAGC GCCCAGGTGAACTTACAGAGGGTGAACTTAAAATAGCTCTGAGTGATTTATTGAAAGAATACAAATACATATAATAAGCCGAACTTTAGTAGGCGTAGAC AGAGGCCTCTGTGAGGGGCTTCTGTCTTCTCGTAGAGAGTGGCTTCCCGTCTCGAGATGCAGAAGCACGTCGACTACTAGCAAGATAAACCATAAAAGCC TGGTAGAGCAGTTCGATGCCAAGCCTACGGAGGTTAGTGCGTTGTTCAGCAATACGCTGGACCCGGCGCGAGCGACCGAGTTGCAGGAAAAGATGCAAAG
|
|
| Amino Acid Sequence |
>HNH nuclease
MAVNDYEPGSMVITHVQGGGRDIIQYIPARSSYGTPPFVPPGPSPYVGTGMQEYRKLRSTLDKSHSELKKNLKNETLKEVDELKNEAGLPGKAVSANDIR DEKSIVDALMDAKAKSLKVIEDRPANLYTASDFPQKSESMYQSQLLASRKFYGEFLDRHMSELAKAYSADIYKEQIAILKQTSQELENKARSLEAEAQRA AAEVEADYKARKANVEKKVQSELDQAGNALPQLTNPTPEQWLERATQLVTQAIANKKKLQTANNALIAKAPNALEKQKATYNADLLVDEIASLQARLDKL NAETARRKEIARQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYAL GMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPS STTLVVPKPVPVYEGVTLTPLKTEPESYPGVLLDLNDLIVIFPADSGVKPVYVMLSSPLDSGIFTRRQLQKKFDSHKYDFGLGEKSANNGTLAEFRDKIL EHLADPATVEKGTYHSEVKSKVHYNARTNIVVIIGEDGMFVSGWRIEPGTDQYNFYMKNEVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|