Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_11_a1, TC72_RS12995
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTCCGGCAATAGCGGCGGCGCCTCCGCCAGGGCTTCGTGGCCGGCCGGGTCGAGGTGCAGCCAGGACTTGCGCCGGTCCTGTTCGTCGCGCCGACGATA GAGCAGGCCGCGTCCTTCGAGGCGGTCGAGCACGCCGGAGAGCGATGCCTGGGACAGGCTGACCAGCTTGGCCAGTTGCGTCGCGGTCAGTTCTCCCTCC ACCGCCAGGACATGCAGGATCAGCAATTGCAGCGGGGTCAGGCCACCGTATCGGCTGAGACGCTTGGAGTGGATTTCGGCGGCCTGCTGGAGACGGCGGA TGGCGCGGAAAATAGCGAGCGAATAGGTATCGGCAGCGGTCTTATTACTTTCAACCATAATAAATTCTTCGTTAAGGGTCCTGATAGGCCCGGAAAATTC GTATAGAACTCCTTCCAACTGTAACGGTCCTCTGTTAGGTAAGTCATGTACCCGGAAGGGGTACGCAACCCACTTCCCCAACGGAGAACCGGTAAGGAAT
|
|
| DNA Sequence for Gene |
>TC72_RS12995
ATGTGCGGCATATCAGGAGAGTTTCGTTTCGACAACCAGGCAGCCGACCTCGCAGCGGTCGAACGCATCACCCACCACCTGGCCCCTCGCGGCCCCGACG CCTGGGGCTTCCACGCCCAGGGTCCGATCGCCCTCGGACATCGACGGCTGAAGATCATGGACCTGGCGGAAGCTTCCGGCCAACCGATGATCGATCCCGA TCTCGGCCTGGCCATGGTGTTCAATGGCGCCATCTACAACTACCCCGAACTGCGTGGCGAACTGGAAAGCCTTGGCTATCGGTTCTTCTCCGGCGGCGAC ACCGAAGTTCTCTTGAAGGGGTACCATGCCTGGGGCGCCGATTTATTGCCCCGGCTCAATGGGATGTTCGCCTTCGCCGTCTGGGAGCGTGATCGCCAGC GGCTGTTCCTGGCCCGTGACCGCCTCGGCATCAAGCCGCTCTACTACAGCCTCGACCGCTCGCGCCTGCGCTTCGCCTCGAGCCTGCCGGCCCTGCTCAA GGGCGGCGACATCGCCAGCGACCTCGATCCGCAGGCGCTGAATTTCTACCTCAACTTCCACGCCGTGGTTCCCGCCCCGCACACCTTGCTGGAGGGCGTG AAGAAGCTGCCGCCGGCGACCTGGATGAGCGTCGACCTCGACGGCAGCTGCGAGCAGCGCACCTGGTGGACGCTGGACTACGGCCCACGCCCGGACGAGC GCGAGCTGACGCTCGACGACTGGCAGGAGCGCGTCCTCGACGGCCTCCGCGAAGCGGTGGCGATCCGCCAGCGCGCCGCCCGCGAGGTCGGCGTGCTGCT CTCCGGCGGGGTCGATTCGAGCCTGCTGGTGGGCCTGCTGCACGAAGCCGGGGTGGACAACCTGCTGACCTTCTCCATCGGCTTCGAGGATGCCGGCGGC GAGCGCGGCGACGAGTTCCAGTATTCCGACCTGATCGCCGAGCGCTATCACACCCGCCACCATCGCCTGCGCATCGGCGAGCACGAAGTGATCGAGCAGT TGCCGGCGGCCTTCCGCGCCATGAGCGAGCCGATGGTCAGCCACGACTGCATCGCCTTCTACCTGCTCGCGCGGGAAGTCTCGAAGCACTGCAAGGTGGT GCAGAGCGGCCAGGGCGCCGACGAGCTGTTCGCCGGCTACCACTGGTATCCGAAGGTGGATGGCGCCGACGACGCCTTCGCCGCGTACCGCGCGGCGTTC TTCGACCGCGACCACGAGGAATACCTGGCCACCGTCGGCGAGCGCTTCCGCGTCGAGGACGTCGCCGGGCGCTTCGTCCGCGACCACTTCGCCAGCCCCG GCGCCGAGGCCGCGGTGGATAAGGCGCTGCGCCTGGATAGCACGATCATGCTGGTCGACGACCCGGTCAAGCGGGTCGACAACATGACCATGGCCTGGGG CCTGGAAGCCCGCGTGCCGTTCCTCGACTACCGCCTGGCCGAGCTGTCGGCGCGCATTCCCGCCCGCTTCAAGCTCGGCGACGGCGGCAAGCAGGTGCTC AAGGGTGCCGCGCGCAAGGTGATTCCCAGCGAAGTCATCGACCGGCCCAAGGGCTACTTCCCGGTGCCCGGCCTCAAGCACTTGCAGGGCCGCACCCGCG AATGGGTACGCGAACTGCTGCTCGACCCGAGCCAGGACCGCGGCCTGTTCCAGCCGGCGATATTCGATCGCCTGCTGAGCGATCCGGACGGCGACCTCAC ACCGCTGCGCGGCTCCAAGCTGTGGCAGCTGGCCGCCCTCAACCTCTGGCTCAGCGAACAGGGACTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAATGGGCCCCCAACGCAGGGGCCCGAACCAGGAGCGATCATGAAAGGCCACTTGCATCTGCCTCACCCGCACAACCAGCGCCTGCAACGTATCCAGGCG CCCACCTACGAACGCCTCCAGGCGCGTCTCGCCGAAGATCACAGCGAGCCCACCGAGAAACCGCTGAGCATCCACTGCGGCTGGGGCCGCCTGCTGATCG GGCAGACCTACCCGGACGCCGAGGAACTGGCCCGCGACCTGTTGCAGGAAGCCCCCGGCGAACGCGACATCGCGCTCTACGTGGCGGCGCCGCAGCAGGT CCTGGCCCACGCCCCGCAGCAGCTCTTCCTCGATCCCTCGGATACCCTGCGCCTGTGGTTCACCGACTACCGCCCGGCGCGCCGTCCGCCACGCGGTTTC CGCATCCGCCGGGTGCATACCGAGGAGGACTGGGCGGCGATCAACCGCCTGTACCTGGCGCGCGGCATGCTTCCGGTGCAGACCGAGCGCCTCAGCCCGC
|
|
| Amino Acid Sequence |
>glutamine amidotransferase
MCGISGEFRFDNQAADLAAVERITHHLAPRGPDAWGFHAQGPIALGHRRLKIMDLAEASGQPMIDPDLGLAMVFNGAIYNYPELRGELESLGYRFFSGGD TEVLLKGYHAWGADLLPRLNGMFAFAVWERDRQRLFLARDRLGIKPLYYSLDRSRLRFASSLPALLKGGDIASDLDPQALNFYLNFHAVVPAPHTLLEGV KKLPPATWMSVDLDGSCEQRTWWTLDYGPRPDERELTLDDWQERVLDGLREAVAIRQRAAREVGVLLSGGVDSSLLVGLLHEAGVDNLLTFSIGFEDAGG ERGDEFQYSDLIAERYHTRHHRLRIGEHEVIEQLPAAFRAMSEPMVSHDCIAFYLLAREVSKHCKVVQSGQGADELFAGYHWYPKVDGADDAFAAYRAAF FDRDHEEYLATVGERFRVEDVAGRFVRDHFASPGAEAAVDKALRLDSTIMLVDDPVKRVDNMTMAWGLEARVPFLDYRLAELSARIPARFKLGDGGKQVL KGAARKVIPSEVIDRPKGYFPVPGLKHLQGRTREWVRELLLDPSQDRGLFQPAIFDRLLSDPDGDLTPLRGSKLWQLAALNLWLSEQGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|