Pseudomonas aeruginosa AZPAE14379, NQ53_RS04230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGTTCTCCAACTACGCGTCCCTGCACGAGAAAGGCAGCATCGTCCGCGGTACCGTGAAGGAAGTCGACGCCAAGGGCGCTGTCGTCAGCCTGGGCGAC GACATCGAAGGTATCCTGAAGGCTTCCGAAATCAGCCGTGACCGCGTCGAAGACGCGCGCAACGTCCTGAAGGAAGGCGAGGAAGTCGAAGCCAAGATCA TCAGCATCGACCGCAAGAGCCGCGTCATCAGCCTCTCCGTCAAGTCCAAGGACGTCGACGACGAGAAGGACGCAATGAAAGAACTGCGTAAGCAGGAAGT AGAAAGCGCTGGTCCGACCACCATCGGTGATCTGATCCGTGCTCAGATGGAGAATCAGGGCTAAGTCTCTGATCCATCATGAAAAAGGGCGGCCTAGGCC GCCCTTTTTCGTTTTCCCCTTCTTGGACCTGTTCAAAGACTGATCAGCATGCTAAAAGAGACCTGAGCTGATCTAGCCGCTTGAAAAAGAAGGGAAAACC
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| DNA Sequence for Gene |
>NQ53_RS04230
ATGACCAAGTCGGAGTTGATCGAACGGATCGTTACCCATCAGGGGCAACTGTCCGCGAAGGATGTCGAGTTGGCAATCAAGACCATGCTGGAGCAAATGT CCCAGGCCCTGGCGACCGGGGACCGGATCGAGATCCGTGGCTTCGGCAGCTTTTCCTTGCACTACCGCGCCCCGCGCGTCGGTCGCAACCCCAAGACCGG GGAGTCGGTACGCCTCGACGGCAAGTTCGTGCCGCACTTCAAGCCGGGCAAGGAGTTGCGGGATCGGGTCAACGAGCCGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TATCGGTCCATTCGGATATTGGAGTCCTCATGCTTTGGATAAGGCGCATACTGCTGATGGGTGGAGTGCTGTTTATCGCTCTTCTCGTAGTAGTTATGGT ATTGGAAAACCGGCAGGTTACTCATTTCGAACTGTTCGGTTTGCTTACCCCCGAGCTGCCCGTTGTTCTCTATGTTGCCTTGGTGTTCATCTTGGGTGGT TTCATTGGCCTATTGGCCGGTTCGTCACTTTTAGCGCGAGCTAATATACGTATCAAGGCAATCGAGAAGGATCTTGCCAAGGCTCGGAAAGAGAGAGATT CCTTACTTGCTCGGCTTTCTTCATCGAGTGATGGGGGGTCTGACAATGGCCTGAGGCGCAAGGACTCATAGCGGATCGACTGGTTAGAGTGGCCTTCCAT CTTGATTGCGTTCTGCCATCATTTTGCTTGTTACCTCCGGGCTTTTTCTTTGAAGCTGTTTCGCGATTTGAATCGTATGCTCAGCTGTACTGAGCGAGCA
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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