Strain | Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_19, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGCCCGCGCCTGGACCGCCTGGATTCGGCGCGGATCGGCAGCTCGCGGGCGATCACCCAGCTCATCCTGCACCTGGTCGAAGGCACGCCGATCCGCCTGG TCGACGGCGGCGCGCAGAAGCGCTGCTTCACCGACGTCGACGACGGCATCGAGGCCCTCGCGCGGATCATCGACAACCGCGACGGCCGCTGCGACGGGCA GATCGTCAACATCGGCAACCCGGACAACGAGGCGAGCATCCGCCAGCTCGGCGAGGAACTGCTGCGCCAGTTCGAGGCCCACCCGCTGCGCGCGCAGTTC CCGCCCTTCGCCGGCTTCCGCGAGGTGGAGAGCCGCAGCTTCTACGGCGACGGCTACCAGGACGTGGCCCACCGCAAGCCGAGCATCGACAACGCCCGGC GCCTGCTCGACTGGCAGCCCACCATCGAACTGCGCGAGACCATCGGCAAGACCCTCAACTTCTTCCTCCACGAAGCGCTCCGCGAGCGCGAGGCACAGGC
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DNA Sequence for Gene |
>NQ53_RS24500
GTGATCCAGGCCGGCCTGCGCATCGACGTCGACACCTTCCGCGGCACCCGCGACGGGGTGCCGCGGCTGCTCGAGCTGCTCGACGAAGCCGGGCTGAAGG CGACTTTCTTCTTCAGCGTCGGCCCGGACAACATGGGCCGCCACCTCTGGCGCCTGGCGCGCCCGGCGTTCCTCTGGAAGATGCTCCGCTCGCGCGCCGC CAGCCTGTATGGCTGGGACATCCTGCTGGCCGGCACCGCCTGGCCGGGCAAGCCGATCGGCCGCGAACTCGGCCCGCTGATGCGGCGGACCCAGGCCGCC GGCCACGAGGTCGGCCTGCACGCCTGGGACCACCATGCCTGGCAGACCCACGCCGGCGTCTGGAGCGTGCAGCAGCTCGGCGAGCAGATCCGCCGCGGCA GCGATTGCCTGGCGGACATCCTCGGCCAGCCGGTGCGTTGTTCCGCCGCCGCCGGCTGGCGCGCCGACGGCCGGGTGGTCGAGGCCAAGCAGCCCTTCGG CTTCCGCTACAACAGCGACTGCCGCGGACGCGGCGCGTTCCGCCCGCGCCTGGCCGACGGCAGCCCCGGCATCCCGCAGGTGCCGGTGAACCTGCCGACC TTCGACGAGGTGGTCGGTCCCGGCCTGCCGCGCGAGGCCTACAACGACTTCATTCTGGAACGCTTCGCCGCTGGCCGCGACAACGTCTACACCATCCACG CCGAGGTCGAGGGGCTGCTCCTCGCCCCGGCGTTCCGCGAACTGCTGCGGCGCGCCGAACGGCGCGGCATCCGCTTCCGCCCGTTGGGCGAACTGCTGCC GGACGATCCGCGCAGCCTGCCGCTGGCCGAACTGGTGCGCGGCCGCCTGGCCGGCCGCGAGGGCTGGCTGGGAGTGCGCCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCCGCCGCCAGACCTGTTCGCTGCTGCTGATCGCCTTCGGCCTGTTCTACCTGGTTCCATTGAGCAACCATGGCCTGTGGATTCCCGACGAGACCCGCTA CGCGCAGATCAGCCAGGCGATGCTGCTGGGCGGCGACTGGGTGTCGCCGCACTTCCTCGGCCTGCGCTACTTCGAGAAGCCGGTCGCCGGCTACTGGATG ATCGCCCTCGGCCAGGCGGTCTTCGGCGAAAACCTGTTCGGCGTGCGCATCGCCTCGGTCGTCGCCACCGCCCTCAGCGTCCTGCTCGCCTACCTGCTGG CCCGCCGCCTGTGGCGCGACCCGCGCACCAGCCTGGCGTGCGCGCTGCTCTACGCCAGCTTCGGCTTGATCGCCGGGCAGTCCGGCTATGCCAACCTCGA CCCGCAATTCACCTTCTGGGTCAACCTGAGCCTGGTGGCGCTGTGGCATGCCCTCGAGGCGGGGAGCCGCCGCGCGCGCCTGCTCGGCTGGACCCTGCTC
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Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MIQAGLRIDVDTFRGTRDGVPRLLELLDEAGLKATFFFSVGPDNMGRHLWRLARPAFLWKMLRSRAASLYGWDILLAGTAWPGKPIGRELGPLMRRTQAA GHEVGLHAWDHHAWQTHAGVWSVQQLGEQIRRGSDCLADILGQPVRCSAAAGWRADGRVVEAKQPFGFRYNSDCRGRGAFRPRLADGSPGIPQVPVNLPT FDEVVGPGLPREAYNDFILERFAAGRDNVYTIHAEVEGLLLAPAFRELLRRAERRGIRFRPLGELLPDDPRSLPLAELVRGRLAGREGWLGVRQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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