Strain | Pseudomonas aeruginosa strain AZPAE14372 AZPAE14372_contig_5, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCGAAGAACAGGTTCGGCTCGCCGAGCTTCATGAAGTCGTCCTTCGACTGCCAATCCGGCTGGGCGATGATGCCGACGCGGAACCCCTGGGCCTCCAGC AGGCGGCCGATGATGGCCATGCCGAAGGACGGGTGGTCGACGTAGGCATCGCCGGTGACGATGATGATGTCGCAGGAGTCCCAGCCGAGCTGATCCATCT CTTCCCTACTCATAGGCAGGAAGGGCGCCGGACCGAAACACTCGGCCCAGTACTTGGGATAGTCGAACAGCGGCTTGGCGGCTTGCATCACGGGCACCAG GGGGTATCTCTAGGAATAGGGGGTCGCGAAAACGCGGGCGCGGAATATAGCACAAAAAATGAGCAATTCCGACGTTTTCACTGGGTATTGCCTGCCGTCG GCCGGCTTCGAAAAAATGCCATCATTTCGCCACCTTGTTTCTATACTCCATTCATCGTCATCTCACCCGGCCTCTAAGGCAGGCCCCCGGGAGAGTCATC
|
|
DNA Sequence for Gene |
>NQ51_RS08570
GTGCGCCATCCTCTTGCCCTGCTCGCGGTCATCTTCCTGCTACTGGCCAGCGCCGTTTCGCGCGCCGCGCCGGAGTTTCCAGCGCCCCCGGCCAGCGGCG CCTGGTTGAACGGCTCGCTGGACCTGCTCGAAGACCCCGATGGCAACCTGGCGGTGGAGGACCTCGAACAAACGGAGCAGGCCGGCCGCTTCGTCGCCGC CGCCGGCCGCACCAGCGTCGGCCTCAGTCGCAGCGTCTGGTGGCTGCGCCTCGACCTGCCGAGACGCGAGGCGGTATCCGGCGGCTGGTGGCTGGAAGTC GCCAGCGCCAGCCTGCACGACCTGCGCCTGTACCTCCCCGACGAGCGCGGCGGGTTCCGCGAACATCGCAGCGGCGAAGCGGTGCCCTTCGCCGAGGGCC GCGACCACGCCTATCGTCATCCGCTGTTCCGGATCCCTCCCGGCGATGGGCCGTTGCGCGTCTACCTGCGCAGCTACGATCCCGGCGGCAACGCCTTTCC GCTGAGGCTCTGGAGCCACGACGAACTGCTGGAATACCGCAGCCAGGGCAACCTGCTGTTCGGCATGGCCTACGGGCTGATCCTCGCCCTGCTGCTGTAC AACCTGTTCCTCTTCACCAGCCTGCGCGATCGCGCCTATTTCTGGTACGTGCTGACCGCTGCCAGCGCGCTGGTGCTGACCCTGAGCATCAGCGGCCATG GTTTCGAGTATTTCTGGCCCGAGCGGGCGGTGCCCTGGTGGCTTGACCGCCTGGCGCTGCTGGCGATCTGGGGCATCTGCGTGATCCGCTTCAGCCAGAA CCTGCTGCAAAGCCGGCAGCACGCACGCTGGGCCCATCACCTGCTGAACGCCTGTTGCCTGCTGTTCCTTGCCTGCCTGGCGTTCAACGCCGCCGGCTGG CGCTGGCAGGCGGCCGGCGTGCTGGCGCTGACCCTGCTGGCCAACCTGCCGATCGCCATCGGCCTGGCAGTGCAGCGCTGGCGCCAGGGTTCGGCCACGG CGCGCCTGTACCTGGTCGGCTTCGGCCTGGTGCTCGGCAGCGTCAGCCTTGGCGTGATGCGCGCCACCGCGCTGGTCCAGCCGACCTCGGCCAACGCCAT GGTCTTCCCGCTGGCGCTGACCCTGGAGGCCCTGCTGTTCTCCCTGGCGCTCGCCTCGCGCATCCAGGATCTGAAGCAGGAAAGGGCCCTGGCCCTGGAC CAGGCCGACCAGGAAAAGAACGCGCGCCTGGCCCTGCTGCACAGCGCCCAGCGCGACCTGGCACGCGCCGTGGAAGTCCGTACCAACGAGCTGAGCGAGG CCAATCGCCAGTTGCAGATGCGCGAAGCGCAACTGCAGTACGCCGCCCATCACGACCCGCTGACCGGGCTTGGCAACCGCAGGCACCTGATGGAGTTCGC CGAAAGTGCCCTGGACGACGCGCGCCGCCACGGCAACAGCATGGCGCTGCTGCTGATCGACCTGGATCACTTCAAGCCGATCAACGATACCCATGGCCAC GATGCCGGCGACTTCGTCCTGCAGAACGTGGCCCAGCGGCTGCGCCATTGCGTGCGCACCGAGGATTGCGTGGCGCGCCTCGGCGGCGACGAATTCGCCG TGCTGGTCGGCGGGTCGAATGCCGAGCAGCATGCCCGCGACATCGCCGAACGCCTGCTGCGAGAACTGGCGAAACCGGTGGAGTTCGCCAAGCAGTGGCT GGTGATCACACCGAGCATCGGCGTCGCCCTGTTTCCCGGCGACGCCCTGCAGTTCGGCAAACTCTACAAGGCCGCCGACCAGGCGCTGTACCGGGTCAAG GGCGCCGGGCGCGCCGGCTATGCGATGGTCCAGGAGCTACAGTTGGAGCAAGCCATGGACAGCCTTCGAACTTACAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
AGCCTGGAGACAGCCCACATATCGAGCTATCCTACAATTCCTTTGAAAGATGATTTCCAGACCTGCGAGTAAAACGCTCAAAACGAGTAGAAATATAAAA ATCGACTCGATATCACGAGAACACCTAGACCCCTACAATCATAAACCAACCTAAAAACCATAAAAATGCGAAGAAGCCTCCTCCAATTTAAAAATTTTCG AAAAACCCTAAAAAAAAATATAAAGAACCGTCTCGCGCTTCTTTCTCTTGCGCTCCTATATGATACCTCGCTGGCCACTGCGAAGCCTCAGGAAAACTGC AACTTTCTCTGGGGAACGGCCTCAGCGGCCTATCAGGTAGAGGGCGGTTGGAATCTGGACGGGAAAGGACCTTCGAACTGGGACGACTTCACCCATAGAG GCATTACCAAGTATCTTATCGGAGAGAGCCACACTGGCGATGTTGCCACGAACCAGATATCCAGAGACGTCTATCTAAAAGACATAGATCTGATGCGCAA
|
|
Amino Acid Sequence |
>DeoR family transcriptional regulator
MRHPLALLAVIFLLLASAVSRAAPEFPAPPASGAWLNGSLDLLEDPDGNLAVEDLEQTEQAGRFVAAAGRTSVGLSRSVWWLRLDLPRREAVSGGWWLEV ASASLHDLRLYLPDERGGFREHRSGEAVPFAEGRDHAYRHPLFRIPPGDGPLRVYLRSYDPGGNAFPLRLWSHDELLEYRSQGNLLFGMAYGLILALLLY NLFLFTSLRDRAYFWYVLTAASALVLTLSISGHGFEYFWPERAVPWWLDRLALLAIWGICVIRFSQNLLQSRQHARWAHHLLNACCLLFLACLAFNAAGW RWQAAGVLALTLLANLPIAIGLAVQRWRQGSATARLYLVGFGLVLGSVSLGVMRATALVQPTSANAMVFPLALTLEALLFSLALASRIQDLKQERALALD QADQEKNARLALLHSAQRDLARAVEVRTNELSEANRQLQMREAQLQYAAHHDPLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPINDTHGH DAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLRELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVK GAGRAGYAMVQELQLEQAMDSLRTYK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|