Pseudomonas aeruginosa AZPAE14980, NS95_RS28410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14980 AZPAE14980_contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGGCTTCGTTGCAGAACGCGACCCAATATCTGCAACGCCTGGAAATCGCCCACAAGGTCAGCGTCATGGACGGCAACTTCAGCACCACCGATCTCTC CACCGGGCAGCGCAAGCGCCTTGCGCTGATCAATGCCTGGCTCGAAGAGCGACCGGTCCTGGTCTTCGACGAATGGGCCGCAGACCAGGACCCGGCTTTC CGCAGGGTCTTCTACACCGAACTGTTGCCGGACCTGAAACGCCAGGGCAAGACCATCATCGTGATCAGCCACGATGATCGCTATTTCGAAATGGCGGACC AGTTGATAAGGCTCTCGGCAGGCAAGGTCGTCAAGGAAACCGAGACGGCGTGAAACTTTTTCATCCGGTTTTCCGTGGGTAAAACGTCATACTAAGAGAA TTGAGAAGCGATCTCATTTATTCGCAACTTGCCAACCTAAGAAGAGCAATCACCCATGCCAGCACCACACGGTCTCAGTCCTCTGAGTAAGGCGTTTTTG
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| DNA Sequence for Gene |
>NS95_RS28410
ATGCGCCGTGCCTTCCAACGCAGGATTCTTCCCCACTCGCTCGCCATGGCCCTGAGCCTGCCGCTGGCGGGATATGTCCAGGCGCAGGAAGTCGAGTTCG ACATCCCTCCCCAGGCGCTGGGCAGCGCACTCCAGGAGTTCGGCCGCCAGGCGGATATCCAGGTGCTGTATCGCCCGGAAGAGGTCCGGAACAAGCGTAG CAGTGCGATCAAGGGCAAGCTGGAGCCGAACCAGGCGATTACCGAGCTGCTTCGTGGCACCGGCGCATCGGTGGACTTCCAGGGCAATGCGATAACCATC AGCGTCGCCGAGGCGGCGGACAGCAGCGTCGATCTCGGCGCCACCATGATCACCTCCAACCAGTTGGGCACCATCACCGAGGACAGCGGCTCCTATACGC CAGGCACTATCGCCACGGCGACCCGCCTGGTCCTGACTCCGCGCGAGACGCCCCAGTCGATCACCGTGGTCACCCGCCAGAACATGGACGACTTCGGCCT CAACAACATCGACGACGTCATGCGCCATACGCCGGGCATCACCGTCTCGGCCTATGACACTGACCGCAACAACTACTATGCCCGCGGCTTCTCGATCAAC AACTTCCAGTACGACGGGATTCCCTCGACGGCCCGCAACGTCGGCTACTCCGCGGGCAATACGCTCAGTGACATGGCCATCTACGACCGGGTGGAAGTAC TCAAGGGGGCGACCGGCCTGCTCACCGGTGCGGGGTCCCTCGGCGCCACGATCAACCTGATCCGCAAGAAACCTACCCATGAATTCAAGGGCCATGTCGA ACTGGGCGCGGGCAGTTGGGACAATTACCGCTCCGAACTGGACGTCAGCGGCCCGCTGACCGAGTCCGGCAACGTCCGCGGCCGGGCGGTAGCCGCCTAC CAGGACAAGCACTCGTTCATGGATCACTACGAGCGCAAAACCAGCGTCTATTACGGCATCCTCGAGTTCGATCTGAATCCCGACACCATGCTTACCGTCG GCGCCGACTATCAGGACAACGATCCCAAGGGATCGGGCTGGTCGGGCAGCTTCCCGCTCTTCGACAGCCAGGGCAACCGCAACGACGTCTCCCGCTCCTT CAACAACGGAGCCAAGTGGAGCAGTTGGGAACAGTACACCCGCACCGTCTTCGCCAACCTCGAGCACAATTTCGCCAACGGCTGGGTCGGCAAGGTGCAG CTCGATCACAAGATCAACGGCTACCACGCGCCCCTCGGCGCGATCATGGGCGACTGGCCGGCACCGGACAACAGCGCCAAGATCGTTGCGCAGAAGTACA CCGGCGAAACCAAGAGCAACTCGCTGGATATCTATCTCACCGGCCCCTTCCAGTTCCTCGGTCGCGAGCACGAGCTGGTGGTCGGCACCTCGGCTTCCTT CTCCCACTGGGAGGGCAAGAGCTACTGGAACCTGCGCAACTACGACAACACCACCGACGACTTCATCAACTGGGACGGCGATATAGGCAAGCCCGATTGG GGTACCCCCTCCCAGTACATCGATGACAAGACCCGCCAGTTGGGCAGCTACATGACCGCCCGCTTCAATGTGACCGATGACCTGAACCTGTTCCTAGGTG GACGCGTGGTCGACTACCGGGTAACCGGCCTGAATCCGACCATTCGCGAGTCCGGACGCTTCATTCCCTACGTCGGCGCGGTCTACGACCTGAACGATAC CTACTCCGTCTACGCCAGCTATACCGACATCTTCATGCCGCAGGACAGTTGGTATCGCGACAGCAGCAACAAACTGCTCGAACCCGACGAAGGCCAGAAC TACGAGATCGGCATCAAGGGCGAATATCTCGACGGACGACTCAATACCAGTCTCGCCTACTTCGAGATTCATGAGGAAAACCGCGCGGAGGAAGACGCCC TCTACAACAGCAAACCGACCAACCCCGCCATCACCTACGCCTACAAGGGCATCAAGGCCAAGACCAAGGGCTACGAGGCGGAAATCTCGGGTGAACTGGC GCCAGGCTGGCAGGTTCAGGCTGGCTATACCCACAAGATCATTCGCGACGACAGTGGCAAGAAGGTTTCCACCTGGGAGCCTCAGGACCAGTTGAGCCTC TACACCAGCTACAAGTTCAAGGGCGCCCTGGACAAGCTCACGGTCGGCGGCGGCGCCCGCTGGCAGGGCAAGAGCTGGCAGATGGTCTACAACAATCCCC GCAGCCGCTGGGAAAAGTTCTCCCAGGAAGACTACTGGCTGGTGGACCTGATGGCCCGCTACCAGATCACCGACAAGCTGTCGGCCAGCGTCAACGTCAA CAACGTCTTCGACAAGACCTACTACACCAACATCGGTTTCTACACCTCGGCATCCTATGGCGATCCACGGAACCTGATGTTCAGCACTCGCTGGGACTTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGCTGCGAAAAAGAACGCCCCGCAATGCGGGGCGTTCTGCTTCTCGGCTACCCCACGCGCCCCATCGCCGAAGACGCCTGTCGGCACGACACCAAA TGATTCCTGTACAGAAACAAAGAGCCCGCCTGAAGGCGGGCTTTGAACGGAACGGACCTGAGATCAGCGCCCGGCACGCTCCAGGGCGGCCCGGAAGCTC TGCACAAACTCAGGGTGGTCGATGATCTTGTCGTGCCGGGTATCCAGCACCCGCACCGGTTCGACACGCTCAGCCCCGATCGCCTCGGCCATCGAGCGCT CCACCGCGCTCCGCTGGATGGCATTGGTGCTGCGCGCGGCCCACCAGAGGCTGACCTTCGCCGTCAGACGCGGGTAATCCATCGCTTTCAGGCGCTCGTC GAGGATCTGTTTCAACTCCCAGGACACTTCCAGTTCGTTGCTCTGTGCGATTTCGCTGCGCAGTGTCGCGAACTCGGCGCCGATCTCCGCTTCCGCCCAG
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| Amino Acid Sequence |
>ligand-gated channel
MRRAFQRRILPHSLAMALSLPLAGYVQAQEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITI SVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSIN NFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAY QDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQ LDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDW GTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQN YEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSL YTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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