Strain | Pseudomonas aeruginosa strain AZPAE14980 AZPAE14980_contig_17, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGCGTTCCAGCAGCGGCGCCGGCATGCGCGGCGCGCCGCGCATGATCTCGCAGGAGAAGACTCTGGCCGCGTGCGGCCGCTCGGCGCCGATGCGCATCTT GTTGTCGACGTAGGCGCGTAGCGCCTCGGCGGGCGGCTGGTCGCCGGCGAATGGCCGGGAGGCTTCCAGCAGGGGCTCGACGATGCTGTCCAGCACCGCC TCGTAGAGTTGCGCCTTGGAGCGGTAGTAATAGAGCACGTTGGCCTTCGCCACGCCGGCGCGCTCGGCGACGTCGCTGAGCCGGGCGGCGCTGAAGCCGC AGTCGGCGAAGACTTCGCAGGCGGCGTCGAGGATCAGTTGCAGGTTGCGTTGGCGGATCTTCTTCATCGGGACCGATACGGGGCAGGTTTCGTTGTTAAT ATTTTTATATAACGAACGCCTTGTGCCTGGATAGTCGTCGTCAGGCCGGCGACGCTTGATCGGATGCGCATTGCCAAGCCGTGGGGGCGCTGGTATCTGT
|
|
DNA Sequence for Gene |
>NS95_RS17740
ATGCATGAACAGTACCAGGCTCCGCTTCCCGTGAATTCCCCAGCGCTTCCCGAACCCTTCTACTACCTGCACAACTTCCGCGCGGTGCTCGCATGGATCG GCGAACGCTATGCCGATCTGCTCGACGATCAGGAACGTGCCTTCATCGCCGCGTTCGCCGAGCTGCCCGAGGCCAGCCAGGCCCTGCTGGTGCGCATGGT GATGCGCAAGGGCACGCTGTTCCGCGAAGGCAAGCTGGCCTATGCCGAGATCGGCGACACGCGCGCCGCCGTGCAACCGCTGTTGGCATTGGGCTGGGTG GACGCGCAGCCGACCCTGGAACTGGCGCAACTGTTCGGCTTGCTGAAGAAGGACGAATTGTCGCAGCTGTTCAGGGACCATCTCGGGCGCGCGAACCTGC GCAAGGATGCGCTGCTGGAACGGCTCCAGCCGTTGTTCCCCGAGGCGCGGCGGCTCGCCGAGTGGCAGGCCGACTTCGCCGAACCGGTCTACGAGTTGCG CTGCATGGCGCTCTGCGACCGCTTGCGGTTGATGTATTTCGGCAACCTGTGGCAGGACTGGTCGGAGTTCGTCCTTGCCGACCTGGGTATCTATCGTTAC GAAAGCGTCGAGTTTTCCGCCGACTCTCGCGGCTTTCGCCTGCGCGCCGACGTCGACGCCTATCTCCACCTGTTCGACTGCCGCCAGCGCTTCGACCTCG GCGAGCCGCTGGAGGAACTGCTCGCCGGCCTGCCGGGCGAACCCTACGCCAATCCCTGGCTGGAAGGGCGGCGGGTCAAGCTGCTGTTCCAGTTCGCCCA GCACTGCGAAAAGCAGCGGGATTTCGACCTGGCCCAGCGGCTCTATCGCCAATCCAGCCACCCCGGCGCGCGCCTGCGGGCGATTCGCAGCCTGGAACGC GGCGAGCGCTTCGCCGAAGCCCATGCATTGGCGCGGGAGGCCAGCTGTGCGCCGGAAAGCGACGCCGAACGCCAGGGCCTGGCCCGATTGCTGCCGCGCC TGCAAGGCAAGCTCGGCCTGCCGCGACAGGCGCGGGCGGCGGCTCCTGAAATCGACCGCCTGGACCTGTGCCTGGCGTACCCGAGCGAACCCTGTAGCGT CGAGTGGGCGGTCCGCGAGCACCTGGAAGAGCCCGATTGCGCGGTGCACTACGTCGAGAACGGCCTGATCAATTCGCTGTTCGGACTGCTCTGCTGGGAG GCGATCTTCGCCGCCATTCCCGGGGCGTTCTTCCATCCCTTCCACAGCGCGCCGGCGGACCTGCACAGCGCCGACTTCCGCCAGCGCCGCGCCGCCCTGT TCGAGGCCTGCCTGGGACGGCTGGAGGACGGCAGCTACCGCGACGCGATCCGCTGTCGCTACCGCGACAAGTTCGGCCTGCAGTCGCCCTTCGTCTACTG GGAACTGCTTGGCGAGGAACTGCTCGAACAGGCGCTCGATTGCCTACCGGCGGCCCACCTGCGCGCCTGGTTCGAACGCCTGCTGGAGGATATCCCGGGC AACCGCGCCGGCCTGCCGGACCTGATCCAGTTCTGGCCGGCGCAGCGGCGCTACCGGATGGTCGAGGTCAAGGGACCGGGCGACCGCCTGCAGGACAACC AGTTGCGCTGGCTGCAATTCTGCCGCGAGCGGGAGATGCCGGTGGCGGTCTGCTACGTGCGCTGGCATTTCGATGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCAGGGCGGCGAGGCGCTGTACCAGGTGGCGGTGCGCGCGCTTTGCGAGTTCAGCGCCAAGCGCGGCGACCTCGACCTGCGCTTCACCCCGTCGCCCAGC GCCCTGGAAGGCATCGCCGGACATACCCTGGTGACCTCCCGGCGCCCCGCTCACTACCAGCGCGAAGTGGCGCTGGACGGACGCTACCGTCACTTGCAGG TGCGCGGCCGGGCGGATGGGTACGATCCGCAGGCGAACTGCCTGGAGGAAATCAAGACCCACCGCGGCGACCTCGCCCTGCAACCGGCCAACCACCGGCA CCTGCACTGGGCCCAGGCCAGGGTCTACGGCTGGCTGCTCTGCGCCGAACGGAAGCTGGAGGAAGTCGAACTGGCGCTGGTCTACCTGAAGGTCGGCAGC CAGAAGGAGACCCGCTTCGTAGAGCGGGTGCGGGCCGACGAGCTGCGGCTGTTCTTCGAGAGCCAGTGCCAGGCGTTTCTCGCCTGGGCCGAGCAGGAAC
|
|
Amino Acid Sequence |
>nuclease
MHEQYQAPLPVNSPALPEPFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGTLFREGKLAYAEIGDTRAAVQPLLALGWV DAQPTLELAQLFGLLKKDELSQLFRDHLGRANLRKDALLERLQPLFPEARRLAEWQADFAEPVYELRCMALCDRLRLMYFGNLWQDWSEFVLADLGIYRY ESVEFSADSRGFRLRADVDAYLHLFDCRQRFDLGEPLEELLAGLPGEPYANPWLEGRRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHPGARLRAIRSLER GERFAEAHALAREASCAPESDAERQGLARLLPRLQGKLGLPRQARAAAPEIDRLDLCLAYPSEPCSVEWAVREHLEEPDCAVHYVENGLINSLFGLLCWE AIFAAIPGAFFHPFHSAPADLHSADFRQRRAALFEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLRAWFERLLEDIPG NRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHFDD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|