Pseudomonas aeruginosa AZPAE14840, NR58_RS29330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14840 AZPAE14840_contig_35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCCATCCGGAATGCGAGTGGGCGGACATAGGGTTCTCCTCGTCGTGGGAAACCCATGCTGGCCTGTCTTCGAGTATCCCGATATCGACCGGATGGTTG ATAGGTCGATATGCCACGGAAATAGCACGGAGCGGCGAAGGGAAAGTTATCGAAGGTGAAGTATTAGATGAGTTTTCGTTTCTTCTTTTTTGGTTTTTTA GTTAATGGGTTCCTGTTCTTCTATAAGTATTTTCTGAATTTATTCTTATGTACCTATTGGCTGTTATCGGAAATGGACTACATATGTTTTCGTATGATTA TTATTTTTAAATCCTGTCTTTCTTTCTAGTGTTTGGGTCTGCGTTTATCAGGGCGCAATCTTCGGCTGTCGCGTAATGGTCGGAGGCGCTCTAGGCGGCC GTCCCGGTTGCGCGCAAAGGCTTGGCTACCTTGGCCGGTTCGTACTGCATCGGCTCTCCAGGGAGCAGCCAGGATGTTCCACAACTCCAAAGGAAATCAG
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| DNA Sequence for Gene |
>NR58_RS29330
ATGAACAAGTTCAAACGTGCAATTCTTGCGCCCCTCGTTGCGTCGGGCACCCTTCTCGCGCTGATGTCCCCCGTGGCCCATGCGGTCGATGGGATCGTCA ACTTCTCGGGCAACATCACCGACGTCGCGTGCGATATCAACGGCCAGGCGCCGGGTGCGGGCAACGTCACCAACGTCGACCTGGGTATCGTGGCGCCGAC CCATTTCACCGCCGTCGGAACCAACTCCACTTTCCAGGAGTTCGATCTGGTCCTCTCCGGTGCCGGCTGCACCAATGACAAGAAGGTTTCCATCGCCTTC GATCCGGTCACCAACGTCGACCGTATCAGCGGCAACCTGATGCTGATGGGGCCGTCGGAAGCCAAGGGCGTGCAGATCCAGATCTTCAACAATTCGGCGG CCAACACCACGAAGATCCCGCTGGGCTCGGTCGAGGCCGCCCCGCAGAAGGCAACCGTCCTGAAGAACACGGCGACCCTGAAGTACAAGGCCTCCTATGT GTCCACCGAGAAGACCGTGACCGCGGGTACCGGCCTGTCCCATATCCGCTACCTCCTGGCGTACGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGGTCGACGGACGAAGAGGTGAGGCCATGGCGCCGCTAATGCATCGTTTTCATTCTTTCGTGGCGGCAAGCGCCGTGGCCATCGCCCTGTGCGTCG GAACGGCTCACGCCGGGCTGATCGCACAGGGCACTCGCGTCGTCTTTCCGGCCAGCGAGCGCGAGGTCACCTTGCGGGTCAGCAATACCTCCGGCACTCC CGTGCTGGCGCAAGCCTGGATCGACGATGGCCGGCAGGACGTTCCCCCCGAGGAACTGCAGGTTCCCTTCAGTGTCACGCCGGCCGTGACGCGAGTGGAC CCCAATGGCGGCGCCGTATTGCGCATCGCCTACCTGAAGGCCCCGTTGCCGACGGATCGCGAATCGCTGTTCTGGCTGAATATCCTGGAAGTTCCGCCCA GGGACGAAGACGAAAACAATGCATTGCAGTTTTCCTTTCGTTCGCGCTTCAAACTCTTCTTTCGACCCAGCCAGTTGAAGAGTGTCGATTCGGCTGCCGG
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| Amino Acid Sequence |
>fimbrial protein
MNKFKRAILAPLVASGTLLALMSPVAHAVDGIVNFSGNITDVACDINGQAPGAGNVTNVDLGIVAPTHFTAVGTNSTFQEFDLVLSGAGCTNDKKVSIAF DPVTNVDRISGNLMLMGPSEAKGVQIQIFNNSAANTTKIPLGSVEAAPQKATVLKNTATLKYKASYVSTEKTVTAGTGLSHIRYLLAYE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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