Pseudomonas aeruginosa P7-L633/96, D407_RS10125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain P7-L633/96 contig21, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCATCGCCCGCGACGAAAGCGGCTTCAAGGGGCCGGCCTTGCTGCAGAACATCCTCGAGAGCGGCCTGCGCTTCGGCGACATGGACATCTTCCATCGCC ACGAAAGCATGGCCGGCAATGGCGAGATCCTGTTCTCCATGGCCAATGCGGTGAAACCGGGCACTTTCGACCTGGACGACATCGACAACTTCAGCACCCG CGCCGTGAGCTTCTTCCTCGGCCTGCCGGGGCCGCGCCATCCGAAGCAGGCCTTCGACGTGATGGTCGCCGCCGCGCGCAAGCTGGCCCACGAGCTGAAC GGCGAGCTGAAGGACGAGCAGCGCAGCGTGCTGACCGCCCAGACCATCGAGCACTACCGCCAGCGCATCATCGACCATGAGCGCCGCAGCCTGATGCAGA AGCGCTGATCCGGCCACAGCCCCTTTCTTCGTGCGGGAGAGGGGGCGAACTACTCTATAGAGCAGCCGAGGCTGCTCTTTTCGTTTCACGGACTCCCACC
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| DNA Sequence for Gene |
>D407_RS10125
ATGACCGACACCCAGGCTGCCGCCGAACGCATCGCGCAACTGCGAACCGAACTGGACACTCACAACTACCGTTACTACGTGCTCGACGAACCGAGCATTC CCGACGCCGAATACGATCGCCTGTTCCGCGAGTTGCAGGCGCTGGAGACCGAGTACCCGCAACTGCTGACGCCCGACTCGCCGACCCAGCGGGTCAGCGG CACGCCGGCCTCGGCGTTCGGCGAAGTGCGCCATGAGATCCCCATGCTCAGCCTCGGCAACGCCTTCGAGGAGCAGGACCTGCTGGACTTCGACCGCCGC GTACGCGAAGGACTGGCCGACCTGTTGCCTGGCGGCGACCTGCTCGGCGGTGGCGCGGAGGTCGAGTACAGTTGCGAGCCGAAGCTGGACGGCCTGGCCG TCAGCCTGCTCTACGAGCGCGGCCAACTGGTGCGCGGCGCCACCCGCGGCGATGGCAGCACCGGCGAGGACATCACCAGCAACGTACGCACCATTCGCAA CGTACCGCTGAAGCTGCACGGCGAAGGCTGGCCGGATATCCTCGAAGTGCGCGGCGAGGTGTTCATGTCCAAGGCCGGTTTCGAGGCGCTCAACGCCAAG GCCGTGGAAACCGGCGGCAAGACCTTCGCCAACCCGCGCAACGCGGCGGCCGGCAGCCTGCGCCAGCTGGATTCGAAGATCACCGCCAGTCGCCCGCTGG AGTTCTGTGCCTACGGCTTCGGCCAGGTCAGCGGGACGCTGCCGGACACCCAGGTGGGCATCCTCGAGGCGTTCCGCGGCTGGGGTATCCCCATCAGTCG CGAGCTGCGCCTGGTCAAGGGCGCCCGGGCCTGCCGCGACTACTACGACGACATCGGTCGCCGACGCGATGCGCTGGCCTACGAGATCGACGGCGTGGTG TTCAAGGTCAACCGCATCGCCTTCCAGCGCGAACTGGGCTTCCGCGCGCGCGAGCCGCGTTGGGCGATCGCCCACAAGTTCCCCGCGCGCGAGGAGCTGA CCGAGCTGCTGGGCGTCGAGTTCCAGGTCGGCCGCACCGGCGCCGTGACCCCGGTGGCACGCCTCAAGCCGGTGCAGGTGGCCGGCGTCACGGTGTCCAA TGCGACCCTGCACAACATGGATGAAGTCGCCCGCCTGGACCTGCGCATCGGCGATACGGTGGTAATCCGCCGTGCTGGCGATGTGATTCCGCAGGTCATG CAGGTGGTGCTCGAGCGCCGCCCGGCGGATGCGCAGGCGATCGAGGTACCCGAGCATTGCCCGGTCTGCGGCTCGGCCGTGGAGCGGACCCAGTTGGTCA AGCGCAGCAAGGGCAGGGAGTCGATCAGCGAGGGCGCTATCTATCGCTGCGTCGGCCGCCTCTCCTGTCAGGCGCAGTTGAAGCAGGCGATCATCCATTT CGTATCGCGCCGAGCAATGGACATCGACGGTCTTGGCGACAAGATCGTCGAGCAACTGGTGGATCGCGGGCTGGTCGCCTCGCCGGCGGATCTCTATACC CTGACCTATGAACAGGTGTTCGAGCTGGAAGGGTTCGCCGAGCTGTCCACCAACAACCTGCTGGCGGCCATCGCCGACAGCCGCAAGCCTTCGCTGGCGC GCTTCATCTTCGCCCTGGGGATTCCCGACGTCGGCGAGGAAACCGCCAAGCTGCTGGCGCGTTCGCTGGGTTCGCTCGAGCGGATCGGCAAGGCGCTGCC GGAAGTGTTGACCTACCTGCCGGACGTCGGCGCCGAGGTGGCCTACGAGATCCACAACTTCTTCGCCGACGAGCACAACCGCCAGGTGATCGCCCAGTTG CGCGATGCCGAACATGGCGTGCAGTTGCAGGAAGAGGGCGAGGTCGCCGCGGAGTTCGCCGCTTGTGCCTCGCTGGCCGGTTTCATCGACAAGCTGAACA TTCCCTTCATCGCCGCCACCGGCGCGGAAAAGCTGGCCAGCCGCTTCGGTTCGCTCGACGGCATCATCCGCGCCGACTGGCTCGATCTACGCCAGGTGGA GCGTCTGCCCGAGCGAGCGGCGAAAAGCCTGCGCGATTTCTTCGACGAGCCGGCCAACGTGCAGCGTGCCCTGGCCATCGAGGCGCAGTTGCGTGAGTTC GGCATGCATTGGCAGAGCGAGCGCAAGGCGGTCGAAGGCCTGCCTCTGGCCGGGCAGACCTGGGTGCTGACCGGCACCTTGGAGGCGATGAGCCGGGACG TGGCCAAGGACAAACTGGAAGGGCTCGGCGCCAAGGTGGCCGGCTCGGTGTCGGCCAAGACCCACTGCGTGGTCGCCGGGCCCGGCGCCGGCTCGAAGCT GGCCAAGGCCAACGAGCTGGGCGTGAAGGTGCTCGACGAAGACGGCCTGCTGAAACTGTTCGACGAGCACGGCGTCGCCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGGCGGCGCTGCTGCGAAAGATTTCCGAAGACTGGAGTGAACGATGGACAAGGCAAGAAAGCAGCGGTTGCTGGGCGTGCTCGCATTGGTGGTGCTGT TCGGCGCCTACGTGGGTTGGAGCGAGCGGCCGCGCATCCTGCTGCATTACAGTGGCCAGGCTTCGGCGCCGATCGCCTACAGCTACAAGGAGCAGGGCGT GGAAACCTTCTCCGGGGAGATCCGGCCCGGCCAGGTCCGCGAGTTTCCGGTGAAGCTGTTCGGCGGCAGCGATTACCGGATCGCCTTCTCCTTCCATCGC GGTGAGGAGAAGTATGCGTCGTTCAGCACCAAGCCGGGCTGGGGCACCCTGGACCTGTATGTCGATACCGAGCTGAGCGTATCGACCCAGCCGCCGCCGG AGGGTCTGATCCAGCAGCAATGAACCGCTTTCGCGAAATGGATTGCAAACGTAAGTGCTTGAAGTGGTTGTAACTTACGCGCAAGCCGGTAGAATGGCGC
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRR VREGLADLLPGGDLLGGGAEVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDILEVRGEVFMSKAGFEALNAK AVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGARACRDYYDDIGRRRDALAYEIDGVV FKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNATLHNMDEVARLDLRIGDTVVIRRAGDVIPQVM QVVLERRPADAQAIEVPEHCPVCGSAVERTQLVKRSKGRESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDRGLVASPADLYT LTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQL RDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREF GMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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