Pseudomonas oryzihabitans NBRC 102199, POR01S_RS01905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGACATGCAGACGCTCCGCGCCGCTGCGCAGGAATTGCTGGACACCACGTCCCGCCATGTTCGCTCCGGCCATATAGAAGATCGGACCGCCATCGCCG GCGACGAGAGTGCACCTTTCGACGATGGGCAGCGCGACCGGACCGTTTGACCAGGAAAGTCCAAGGGGCCGCCATGAATCTCCTGCTGGAAACCTTGCTC CACCATCTCCAGGGCCTGGGTCGCATCGAGTTCTTCGAGCGCAGCGAGCATTTCGCACGATTGATGATCACCACACCCGACGGCGTGATCGCCGAACGCC ACCTTTATTACGATCAGCTGCACCATGCCCACGATCTCAAGGCGGTGGTCGATGAGCTGCGCGAAGAGGTCGTGCACCGGCAACGCCTGCTGCAAGACGT CGGTTGACGGGTGATTTGTCGTTCGCCATGGACAAATCCGGGCGGTCTTGGCTTACTGTACGGATAATCAGTCGTCATGCCCGGCCCGGCATCTGCTCCC
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| DNA Sequence for Gene |
>POR01S_RS01905
ATGGCTCCGGACAATTCTCTCGCCCAGCTCCCACCCAAGCGCCAGCGCAAGATCATCCATGTCGACTGTGACTGCTTCTATGCGTCCATCGAGATGCGTG ACGATCCGCGCCTGGGCGGCAAGCCGCTGGCGGTAGGCGGGACCCCCGATCGGCGCGGGGTGGTCGCCACCTGCAACTACGAAGCCCGGGCCTTCGGGGT GCGTTCGGCCATGTCCTCCCATCAGGCGCAGAAACTCTGTCCCGACCTGGTGTTCGTCAAGCCGCGCTTCGAGGTCTACAAGGAGGTGTCGCGGCAGATC CACGGGATCTTCCAGGACTACACCGAGCTGATCGAGCCGCTGTCCCTCGACGAAGCCTACCTGGATGTCACCCAGTGCGAGCTGTTCAACGGCAGCGCTA CCCTGATCGCCCGTGATATCCGCAGGCGGGTGTGGCAGGAGCTCAACATCACGGTGTCCGCCGGGGTCGCGCCCAACAAGTTTCTCGCCAAGATCGCCAG CGACTGGAAAAAGCCCAACGGGCTGTTCGTCATCGCTCCCCACGAGGTGGCTGACTTCGTCGCCGCGCTGCCGGTGGCCAAGCTGCACGGCGTCGGCAAG GTCACCGCCGACAAGCTCAAGCGTCGCGGCATCGTCCTCTGCAGCGATCTGCAGACCTGGTCGCGCTTCGATCTGCTGCGCGAATTCGGCAGCTTCGGCG AGCGCCTCTGGTCGCTGGCCCATGGCATCGACGAGCGCCAGGTCAAAGTGGACAGCCAGCGGCAGTCGGCCAGCGTGGAACGCACCTATGACCGCGACCT GCCCGACGCTGCCGCCTGTGCACAGGAATTGCCCGACTTGCTGGCCAAGCTCGAAGAGCGCCTGACGCGGCTGGCGGACCGCTATCGCCCGGAGCGGCCC TTCATCAAGGTCAAATTCCACGACTTCACCCAGACCACCCTGGAGCAGCAGGGTGCCGGTCGCGATCTCGACAGTTATCGGCGCCTGCTGGAGCAGGCCT ACCGCCGGGGCAATCGGCCGGTACGGCTGCTGGGCGTGGGCGTGCGCCTGACCGATCTGCGCGAGGCGGCGCTGCAGCTGCGGCTGTTCGAGGACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGCTAGAGCGGGCTCTTGGCCTGGGTCGACAGGTTGACGATGGCCGCGTCCAGTTCTTCCAGCGCCGGGCTGGAGGTGGGAGCGCCCTGCTTGAGCAG GGTTTCGCTGTGCTGGCAGGCCGCGCGCAGCTGGGGTACGCCACAATAGCGGGTGGCGCCGTGCAGGCGGTGGACGCGCTCGATGAGGGCGATCCGATCG CCGTCTTCACGGGCCTGGCGGATGGCCTGGCGATCCGCGGCCAGGGAGGCGAGCAGCATGCTCAGGAGATCCTTGGCCAGATCCGGCTTGTTGGCGGCCA GCCGCAGGCCTTCGTCGGCATCCATTACCGGCAGGGTGGAGATGTCCTGGCCACCGCTGTTGAGGCTGGTGACCTCGGGCGCCGAGCTGTGCAGCAGGCG CAGGCCGGTCCACTTGAGGATGACCTGGGCCAGTTGCCGATCGCTGATGGGCTTGGTGAGGTAGTCGTCCATGCCGCTCTGCAGCAGCGCGCGTTTCTCG
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| Amino Acid Sequence |
>DNA polymerase IV
MAPDNSLAQLPPKRQRKIIHVDCDCFYASIEMRDDPRLGGKPLAVGGTPDRRGVVATCNYEARAFGVRSAMSSHQAQKLCPDLVFVKPRFEVYKEVSRQI HGIFQDYTELIEPLSLDEAYLDVTQCELFNGSATLIARDIRRRVWQELNITVSAGVAPNKFLAKIASDWKKPNGLFVIAPHEVADFVAALPVAKLHGVGK VTADKLKRRGIVLCSDLQTWSRFDLLREFGSFGERLWSLAHGIDERQVKVDSQRQSASVERTYDRDLPDAAACAQELPDLLAKLEERLTRLADRYRPERP FIKVKFHDFTQTTLEQQGAGRDLDSYRRLLEQAYRRGNRPVRLLGVGVRLTDLREAALQLRLFED
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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