Pseudomonas oryzihabitans NBRC 102199, POR01S_RS01625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCGCGCGCCGACCTGCGTCTCTTCATGCTCTGCCTGATCCTCGGCCTCACCGGCTGGGCCGGCCTCTGCCGCCTGCTGCGCGCCGAGGCGCTCAAGC TGCGCGAGCTGGAATACGTGCAGGCGGCGCGGGCCTTCGGCGTTTCCCACTTCACCATCCTGCGCCGGCACCTGCTGCCCAACGTCTTCTACCTGGTGCT CATCACCCTGACCCTGGAATTTTCCAGCCTGGTGCTCTACGAGGCGGTGCTCTCCTACCTGGGCATCGGTGTCGATCCGACCATGAATTCCTTCGGCTCC ATGATCAACGACGCCCGCACCGAGATGTCCCGCAGCCCCATGATCTGGTGGAACCTGTTCAGCGCCTTCGCCTTCATGCTGGCCCTGGTGCTGGCGGCCA ACCTGTTCGCCGACGCCGTGCGCGACGCCTTCGATCCGCGCAGTCGCCGGCTGAGATCCGCCTGGCTCAGGCGCCTTCCCGGCCAGGGCGAGGTGCAGCC
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| DNA Sequence for Gene |
>POR01S_RS01625
ATGACCCCGGTGCTGGAGATCCGCGACCTGGAGATCCTGGTCGACGGCGAGGAGGGCACGCGCCAGGCGGTGCGCGGCCTGAGCCTGGCCATCGCCCGCG GCGAGACCTTTGCCCTGGTCGGGGAATCGGGCAGCGGCAAGAGCGTCACCGCGCTCTCGCTGTTGCGCCTGCTGCCGCCTTCGCTGGGTATCGCCCGGGG CGCGGCGCTGCTGACCGGCACCGACCTGCATCGACTGCCGGAAGGCCGCCTGCGCGAATTGCGCGGCGGGCGCGTCGGCACCATCTTCCAGGAGCCCGCC ACCAGCCTGAATCCGGTCATGCGCATCGGCGAGCAGATCGAGGAAACCCTGCGCGCCCATACCGCGCTGCGCGGCGCCGCCGCCCGCGCCCGGGTGGTGG AATGGCTGCGGCGGGTGGGCATTTCCGAGCCGGAGCGACGGATCGACGACTACCCCTTCCAGTTCTCCGGTGGCCAGAAACAGCGCATCATGATCGCCCT GGCGCTGGCCGCCGAGCCGGATCTGCTGATCGCCGACGAGCCCACCACGGCGCTGGACGTCACCGTCCAGGCGCAGATCCTCGCGCTGCTGGCCGACATC CAGCGCGAACTGGGCATGGCCATCCTGCTGATCACCCACGACCTGGCGGTGGTGCGCCAGGTGGCCCATCACGTGGCCCTGATGCGCCACGGCGAGATCG TCGAGAGCGCGCCGGCGGCGGAATTCTTCCAGGCGCCCCGGCATCCCTATGCCCGCGAGCTGTTCGCCGCCATTCCCACCTTCGCCAAGCGCGGCCAGAC CCTGGCAGGAGTACCCCGCACCTTGCCCGCGCGAACCCCGGGCGAGTGCTTGCTGGAGGTACGCGACCTGGCCGTGCACTATCCGATCCGCCGGGGCGCC TGGGGCCGGACTCGGGACTGGGTCAGGGCGGTGGACGGGGTGAGCTTCGACCTGCACGCCGGCGAGACCCTGGCCCTGCTGGGCGAATCCGGCTGCGGCA AGACCACCACCGGCAAGGCGCTGCTGCGGCTGCTCGACGGGCCGCGCATCGGCGGCAGTGCCCGCCTGGGCGGCGCAGAGCTGCTCACGGCCGATGGACG CACCCTGCAACGACTGCGCCGGCAGATCCAGATCGTCTTCCAGGATCCCTTCGCCTCCCTGGATCCGCGCATGCGCATCGCTGCCACCCTGGAGCAGGGG CTGCTGGCCCTGCGCCCGGAACTGGACGCCGCCGAGCGCCAGAGACGTGCCGCCGCCCTGGTGGAGCGGGTCGGGCTGCCGGGGGACACCCTGCAGCGCT TTCCCCATGAATTCTCCGGCGGCCAGCGGCAGCGCATCGCCATCGCCCGGGCGCTGATCGTCGAGCCGCGGGTGCTGGTGTGCGACGAACCCACCTCGGC GCTGGACGTCTCGGTGCAGGCGCAGATCCTCGATCTCCTGCGCGAACTTCAGGCGGAGCGCGGCCTGGCCTATCTGTTCATCACCCACAACTTTGGCGTG GTCGAGTACCTGGCCGATCGTATCGCGATCATGGACGGCGGTCGCATCGTCGAACAGGGCAGCGCCGAACGGGTGCTGCGCGCGCCCGCTCACGCCATGA CCCAGCGCCTGCTGGCCGCCGTGCCGCGCCTGGAATTCGGGACCTCGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTTTCCACCGCGCATCGCCCTGGCCGACTTCGAGCTGGTGTGGCCGCAACCGCGCCTGGCCGCGGCCTTCGCCGACGCCCTGAACTGGAGCTATGCCGA GCACCGCCGCTTCCTTGGCTGGGCGCGCGAACAGACCAGCGTCGCCCAGGCCCGCGACAGCCTGCTCGCGGCCCGCGGCGCCTTCACCCTCGCCCAGGGC GAGAAACGCTACTTCCTGGTGCGCGGTGACGAACTGCTCGGCTGCCTGGGGCTCACGCCACTAGACGGCGGGCGGCGCTTCGAGATCGGTTACTGGCTGC ACAGCCTGCATACCGGGCAGGGCCTGATGACCGCCGCACTGCGGTATTTCGTCGAGCAGCGGGGCACGGCGGGGTTCTTTCTCACCACCTCGGCCGCCAA TGACGCCAGTCAGCGCCTTGCCGAACGGGTCGGTTTCCGGCGCGTCCGGGTGTTGGAAAACGATCGGGAAGGTCCGGACGGACAGCGCTGCGCCACCTGG
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| Amino Acid Sequence |
>ABC transporter ATP-binding protein
MTPVLEIRDLEILVDGEEGTRQAVRGLSLAIARGETFALVGESGSGKSVTALSLLRLLPPSLGIARGAALLTGTDLHRLPEGRLRELRGGRVGTIFQEPA TSLNPVMRIGEQIEETLRAHTALRGAAARARVVEWLRRVGISEPERRIDDYPFQFSGGQKQRIMIALALAAEPDLLIADEPTTALDVTVQAQILALLADI QRELGMAILLITHDLAVVRQVAHHVALMRHGEIVESAPAAEFFQAPRHPYARELFAAIPTFAKRGQTLAGVPRTLPARTPGECLLEVRDLAVHYPIRRGA WGRTRDWVRAVDGVSFDLHAGETLALLGESGCGKTTTGKALLRLLDGPRIGGSARLGGAELLTADGRTLQRLRRQIQIVFQDPFASLDPRMRIAATLEQG LLALRPELDAAERQRRAAALVERVGLPGDTLQRFPHEFSGGQRQRIAIARALIVEPRVLVCDEPTSALDVSVQAQILDLLRELQAERGLAYLFITHNFGV VEYLADRIAIMDGGRIVEQGSAERVLRAPAHAMTQRLLAAVPRLEFGTSP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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