Pseudomonas oryzihabitans NBRC 102199, POR01S_RS08840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCTTGGAGGTTTCGGCCGCGAAGACACCCGTGGCCATCGACAGCATCACAGCAGCGGTAGAGGTGATCAGCAGCTTTTTCATGAGTTCGGCCTCGTCGAA ATAAACCTGTGAATCTGATGGGGCCCGCGCCGGAACGGTGGCGGGCATCAGCTGCGGACGGGCAGGTCCACAGCGCACGTCTCAGTTGACTGCGGCCTGG AATGCCGGGTTCCAGGGCATTTGTGAACATTTGTGGGCGAATGGCCGCTCCGTTGCCGGGCATTTGCCCAACGCCCTCGTCGTAGCGCTTCCCAAGCATC GCCAGGCGCCTGACAATTCGTCAGACGAACCCCCTGCGCCGCCTGTGGTCAGTTCGCAGATCGCGCCTCTTCCACCGATAAGGACAATCATGAGGGCTCT CCGCCTTGCTCGCCTCTGCCAGGTAACGGCTGCTCTGACCCTGGTAACGCTGTTACCGGGCTGCTCCCAGGAGCAACCGCCCACCGAGGAACTGGCGCGG
DNA Sequence for Gene
>POR01S_RS08840
GTGGTGGTGGTGCAGCTGAGTCCGATAAAGGACAGTCAGCGCATCCCCTTCACCGGAGATATCCAGGCGCGGGTGCAGGCGCCGCTCGGTTTTCGCGTGA GTGGCAAGATCAGCGAGCGGCTGGCGGATGTCGGCGATCGCGTGCGCGAGGGTCAGGTCCTGGCCCGGCTGGATCCCCAGGATCTGCGCAATAACCTGGC CGCCGCCCAGGCCCAGGTGGAGGCCCAGGAAGCCCGCACCCGGCTGGCGCGGGTCGATTTCGAGCGCCAGGCCGCCCTGCTCCCCAAGGGCTACACCAGT CGCAGCCAGTACGACCAGGCCCAGGCCACCCTGGACGGTGCCCGCAGCGCCCTGCAGACCGCCGTCGCCCAGCGCGACGATGCGCGCAAGCAACTGGGCT ATACCGAATTGCGCGCCAGCGCCGCCGGGGTGCTGACCGCCCGCCACGCCGAAGCGGGGCAGGTGGTGCAGGCCGGCACGGCGATCTTCGACCTGGCGGT GAGCGGCGACCTCGACGCCGTCTTCGATCTCTATGAATCCCTGGCCCGCGAACTCAAGGTCGGCCAGACCCTGCCCGTCGCCCTGCAGGCGCAACCGGCC GTCACGACCCGGGGTACCCTGCGCGAGATCGCCCCGACCGTGGCGAGCAGTGGCACGGTGCGCATCAAGGTACAACTCGATAGACCCCCGGCGGCCATGA CCCTGGGGGCGGTGGTCAATGCCCAGCTCGAGGGCGCGACGGAGCAGGGCTTCGCCTTGCCCTGGACGGCGCTGAACGGCACCACCGAGCAGCCCGCCGC CTGGCGCCTCGGCGAAGACGGGCGGGTCAGCCTGCAGCCGCTGCGCATCGAGCGCTTCACCCGCGACAGCATCATCGTCAACGAGGGCCTCGCGGCTGGC GACCGCATCGTGGTCGCCGGCGGCCAGGCGCTGAGTCCCGGGCAGAGGGTCGAAGTCGCCGAGCGCTCGGCCTTCAACGAGGTGCGCCCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGCCGCTGCTGCCGCTGCTGCCGCTATGTCTGCTGCTGGTCCTGGCGGGCTGCTCGGATGACGAGGCGCCGCCGCCGCCGATCCGGCCGGTGGCGACCCT GACCTTGAGTGCCCCGCCGCCCGGGCGCGAAGTCTTTGCCGGCAGCATCCAGGCGCGCTACGAGAGCGTGTTGGGCTTTCGCGTCGGCGGTCGCATGACC CGGCGGCTGCTGGACGTGGGTCAGCCGGTGCGCCGTGGCCAGTTGCTGGCGGCGCTGGACCCCACCGATCAGGACAATGCCCTGCGCAGTCGGCAGGGCC AGACCGCCGATGCCGAAGCCCAGTGGCGCGATGCGCGCAACGATGCCCGGCGCCAGCAGCAGCTGTTCGACCAGGGCGTTGGCTCGCGCTCCCAGCTGGA TCAGGCGCTGACCCGCCTGCACACCCTGGAAGCCGCCCGCGAACAGGCCCAGAGCGCCGAGCGCCAGGCCCGCGATCAGCGCGACTATGCCGAGCTCTAC
Amino Acid Sequence
>RND transporter
MVVVQLSPIKDSQRIPFTGDIQARVQAPLGFRVSGKISERLADVGDRVREGQVLARLDPQDLRNNLAAAQAQVEAQEARTRLARVDFERQAALLPKGYTS RSQYDQAQATLDGARSALQTAVAQRDDARKQLGYTELRASAAGVLTARHAEAGQVVQAGTAIFDLAVSGDLDAVFDLYESLARELKVGQTLPVALQAQPA VTTRGTLREIAPTVASSGTVRIKVQLDRPPAAMTLGAVVNAQLEGATEQGFALPWTALNGTTEQPAAWRLGEDGRVSLQPLRIERFTRDSIIVNEGLAAG DRIVVAGGQALSPGQRVEVAERSAFNEVRP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site