Pseudomonas oryzihabitans NBRC 102199, POR01S_RS08680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCAGCCCAGCGGCTACACCGAGCCGCTGCTGCACGCCTGGCGCCTGAAGAAGAAAGCCGGCGCCTGATCCGGCCAGGGCTCCCGTCCGGCGCGGGC GGGAGCCACTTACCCAGGTGCGGTGCCGGTGGTCCTCCGACCACCGCCCCTTCCCTTGCCACTGGCGAATTTTTATACTATCGGGTCCCCCGTTCCCGGG ATCATCATCGCCACGAGGAAGACCATGGCCCGCGTTACTGTCGAAGACTGCCTGGACAACGTAGACAACCGATTCGAGCTGGTCATGCTCGCCACCAAGC GCTCGCGCCAGCTGGCCACCGGCGGCAAGGAGCCCAAGGTACCGTGGGACAACGACAAGCCCACCGTCGTCGCCCTGCGCGAGATCGCCGAAGGTCTGGT CGACGAAGAAGTCATCCGTCTTGACGACATCGTCGAAGAAGAGCCGCTGTTCGCCGCCTTCGAAGTCAACGAAGAAGTGGACGGCGAGGCCCTCTAAGCC
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| DNA Sequence for Gene |
>POR01S_RS08680
ATGGCCGCCGAGCCTGCGTATGGTGACGTCCACCCGACCGGCATCGACCTGCTGGCCGAGCGTCTGGCGGACTACCTGACCCCCGACCAGGTCAATCTGG TACGGCGGGCCTACTACTACGCCGAGCAGGCTCACGACGGGCAGCGCCGCCGCAGCGGCGAGCCCTATGTCACCCATCCGCTGGCCGTCGCCAACATTCT CGCCGACATGCACATGGACCATCAGAGCCTGATGGCCGCCATGCTGCACGACGTGATCGAGGACACCGGCATCGCCAAGGAAGCCCTGGCCGGCCAGTTC GGCGAGACGGTGGCGGAGCTGGTGGACGGGGTCAGCAAGCTGACCCAGATGAAGTTCGAGACCAAGGCCGAGGCCCAGGCGGAGAACTTCCAGAAGATGA CCATGGCGATGTCCAAGGACATCCGCGTCATCCTCGTCAAGCTGGCCGACCGGCTGCACAACATGCGCACCCTGGACGCCATGCCGCCGGACAAGAGCCG GCGCATCGCCAAGGAAACCCTGGAAATCTACGCGCCCATCGCCAACCGGCTGGGCATGCACGATTTCTACGTGGAATTCGAGGACCTGGGTTTTCGCGCC ATGCACCCGATGCGCGCCGAACGCATCCAGCGGGCGGTCAAGACCGCGCGGGGCAATCGCCGCGAGATCCTCGGCAAGATCCAGGAATCCCTGGCCAACT GCCTGGCCCGCGACGGCCTGGACGGCGAGGTGGTCGGCCGCGAAAAGCACCTGCACAGCATCTACCAGAAGATGCGCGGCAAGCGTAAGTCGTTCAACGA GATCATGGACGTCTACGGCTTCCGCATCATCGTCGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCGGTGCACAATCTCTACAAGCCGTTCCCGGGG CGCTTCAAGGACTACATCGCCATCCCCAAGGCCAACGGCTACCAGTCCTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAGATCCAGATCC GCACCCGCGAGATGGAAGAGATGGCCAACAACGGCATCGCCGCCCATGGCCTGTACAAGGCCGGCGGCGACGAACCGCGCGCCAGTCACCTGCGCGCCCG CCAGTGGGTGAAGGGCATCCTCGAGTTGCAGCAGCGCGCGGGCAACTCCCTGGAATTCATCGAGAACGTGAAGATCGACCTCTTTCCCGACGAGGTCTAC GTCTTCACCCCCAAGGGCCGCATCATGGAGCTGCCCAAGGGCTCCACGGCCGTGGACTTCGCCTACGCGGTGCACACCGACGTCGGCAACAGCTGCATCG CCTGCCGCATCAACCGCCGCCTGGCGCCGCTGTCGCAGCCGCTGGGCAGCGGCGAGACGGTGGAGATCGTCACCGCCCCCGGCGCCCGGCCCAATCCGGC CTGGCTCAACTTCGTGGTCACCGGCAAGGCGCGCACCAACATCCGCCATGCGCTCAAGCAGCAGCGTCGCTCCGAGTCCATCAGCCTCGGCGAGCGGCTG CTGAACAAGGCGCTGTCCGGCTTCGGCACCCAGCTGTCGAAGATCTCGCCGATGCGCATCCTCTCGGTGCTCGGCGAATACAAGGGCGTGGTGCTGGAAG ACCTGCTCGAAGAGATCGGCCTGGGCAACCGCATGGCCTATGTGGTGGCGCGGCGCCTGGTGTCCGGCAGCGAGCAGGAAGAGCCACTGGAACCCCAGGC CAGCACCACGCCCCAGGGCCCGCTGGCGATCCGCGGCACCGAAGGCCTGGTGATCAGCTACGCCAAGTGCTGCACGCCGATTCCGGGCGATCCCATCGTC GGTCACCTGTCGGCCGGCAAGGGCATGGTGATCCACCTGGAAAATTGCCGGAACATCGCCGAATTCCGGCATAACAGCGAAAAGTGCATCGTGCTCAACT GGGCCAAGGACGTCACTGGCGAATTCAGCGTCGAGTTGCGCGTCCAGCTGGAGCACCAGCGCGGCCTGATCGCCATGCTGGCCAACAACGTCACCGCCGC GGACGCCAACGTCGAGAAGATCGGCATGAACGAGCGCGACGGCCGGGTCAGCGTGGTCCAGCTGGTGGTCAGCGTGCGTGATCGCGTGCACCTGGCGCGG GTGATCAAGAAGCTGCGGACGCTCAAGGGCGTGGCCGGTATCACTCGGGTTCGCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTTGCAGGGTGTCACCACCGGCTTGCAGAATCGGGCCTTTCCCGCACAGGAGCGACCCATGAGCAAGCAAGTGATCCACACCGACAAGGCGCCGGCCGC CATTGGTACCTATTCCCAGGCGATCAAGGTCGGTGACACCGTCTATCTCTCCGGGCAGATCCCGCTCAACCCGACCAGCATGGAGCTGGTGGACGGCTTC GAAGCCCAGGTGGTCCAGGTCTTCGAGAACCTCAAGTCCGTCGCCGAAGCCGCCGGTGGTTCGCTGGCCGATATCGTCAAGCTGAACATCTTCCTGATCG ACCTCGCCCACTTCGCCACCGTCAACGAGATCATGGGGCGCTATTTCCAGCAGCCCTATCCGGCACGCGCCGCCATCGGCGTCGCCGCGCTGCCGAAGGG CTCCCAGGTGGAAATGGATGGGGTCTTGGTACTGAGTTAAAGCCTTTGATCGCGGCCATGGGCCGCTCCTACAGTAGTTGATGCACCTGTAGGAGCGGCC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MAAEPAYGDVHPTGIDLLAERLADYLTPDQVNLVRRAYYYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALAGQF GETVAELVDGVSKLTQMKFETKAEAQAENFQKMTMAMSKDIRVILVKLADRLHNMRTLDAMPPDKSRRIAKETLEIYAPIANRLGMHDFYVEFEDLGFRA MHPMRAERIQRAVKTARGNRREILGKIQESLANCLARDGLDGEVVGREKHLHSIYQKMRGKRKSFNEIMDVYGFRIIVDKVDTCYRVLGAVHNLYKPFPG RFKDYIAIPKANGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHGLYKAGGDEPRASHLRARQWVKGILELQQRAGNSLEFIENVKIDLFPDEVY VFTPKGRIMELPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSQPLGSGETVEIVTAPGARPNPAWLNFVVTGKARTNIRHALKQQRRSESISLGERL LNKALSGFGTQLSKISPMRILSVLGEYKGVVLEDLLEEIGLGNRMAYVVARRLVSGSEQEEPLEPQASTTPQGPLAIRGTEGLVISYAKCCTPIPGDPIV GHLSAGKGMVIHLENCRNIAEFRHNSEKCIVLNWAKDVTGEFSVELRVQLEHQRGLIAMLANNVTAADANVEKIGMNERDGRVSVVQLVVSVRDRVHLAR VIKKLRTLKGVAGITRVRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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