Pseudomonas oryzihabitans NBRC 102199, POR01S_RS08545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGATCGTCTGGACTCGGCGCGCATCGGCAGCTCCCGCGCCATCACCCAGCTGATCCTCAACCTGGTGGAAGGCACCCCGATCAAGCTGGTCGACGGGG GCGCCCAGAAGCGCTGCTTCACCGACGTCGACGACGGCATCGAGGCGCTGTTCCGCATCATCGAGAACAGGGGCGGTCGCTGCGACGGCCAGATCGTCAA CATCGGCAACCCGGACAACGAAGCGAGCATCCGCGAACTGGCCGAAGAGCTGCTGGCTCAGTTCGAGGCCCATCCGCTGCGCCACGAATTCCCGCCCTTC GCCGGCTTCCGCGAGGTGGAGAGCAAGAGCTTCTACGGCGACGGCTACCAGGACGTGGCCCACCGCAAGCCCAGCGTGGAAAACGCCCGTCGCCTGATCG ACTGGCAGCCGACCACCGCCATGGCCGCCACCGTCGGCAAGACGCTGGACTTCTTCCTGCGCGAAGCCCTGGCGCAGCGGGAGGCCTGATGAACACCCTG
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| DNA Sequence for Gene |
>POR01S_RS08545
ATCCCGGCCAGCCTGCGCATCGACGTGGACACCTATCGCGGCACCCGCGAAGGGGTACCGCGGCTGCTCGACCTGCTGGACGAGGCCGGGGTCAAGGCCA CCTTCTTCTTCAGCGTCGGACCGGACAACATGGGGCGCCACCTCTGGCGCCTGGTGAAGCCCACCTTCCTGTGGAAGATGCTGAGGTCCAAGGCCGCCAG CCTCTATGGCTGGGACATCCTGCTGGCCGGCACCGCCTGGCCGGGTCGGCCCATCGGTCGCGACCTCGGTCACCTGATGCGCGAGACCCGCGCCCGCGGC CACGAGGTCGGCTTGCACGCCTGGGATCACCACGCCTGGCAGGCCCATACCGGCAGCTGGAGCCTGGAGCGTCTAGGTCAGGAATTCGGCCGTGGCCTGC AGGCCCTGGAAGACATCCTCGGCGCCAGGGTCGACTGCTCCGCCGCCGCCGGCTGGCGCGCCGATCCGCGCGTGGTGCTGGCCAAGGAGGCCTTCGGCCT CCGCTACAACAGCGATTGCCGCGGCAGTGCGCTGTTTCGTCCGCGGCTGGGCAATGGCAGCCACGGCACCCCCCAGGTGCCGGTGGACATGCCGACCTTC GACGAGGTGGTCGGCCCGGAGCTGGCCGCCGGTGACTGGAACGGCTATCTGCTCAAGCGCTTCCGTCCGGGGGCGCTCAACGTCTACACCCTGCACGCCG AGGTGGAAGGCATTGCCTTCGCCAATGACTTCCGCGCCCTGCTCAAGGCCGCGCGGGAGCAGGGCATCCTGTTCCTGACCCTGGGCGATCGCCTGCCGGC CGATCCGCGCCAGTTGCCCGCGGGCAATCTGGTGCGTGGCAGCCTGGCCGGCCGCCAGGGCTGGCTGGGCGTGCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGGCGTCGCCTGTGGATGCTGCTGCCGCTGGCGCTGCTGGCCTATGCCCTGCCGCTGGCCTGGCGCGGCCTGTGGATTCCGGACGAGTCGCGCTATGC GCAGATCGCCCAGGAACTCTGGCGGCGTGGCGACTGGGTGGTGCCGCACTTCCTCGGCCTGCCCTATTTCGAGAAACCCATCGGCGGCTACTGGACCCAG GCCATCGCCCAGGCCTGGCTCGGTGACTCGCTGTTCAGCGTGCGCCTGGTGCCACTGCTGGCCAGCCTGGCCACCGCCGCCCTGGTGGTGCGCCTGACCC GGCTGATCTGGCAGGACCGCCCGCTGGCGCTGCTCGCCGGGGTGGTCTATCTCTCCTGCGTGGCCGTGGCGGGGCTGGCCACCTACGTGACCCTCGACGC CCAGTTCGCCTTCTGGATGGCCCTGGCGCTGCTCGCCCTCTGGCAGGCCCAGGCCGCCGAGACCCGCGGCGCGGCCCTGGTGCAATGGGCGCTGCTGGGG
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| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MPASLRIDVDTYRGTREGVPRLLDLLDEAGVKATFFFSVGPDNMGRHLWRLVKPTFLWKMLRSKAASLYGWDILLAGTAWPGRPIGRDLGHLMRETRARG HEVGLHAWDHHAWQAHTGSWSLERLGQEFGRGLQALEDILGARVDCSAAAGWRADPRVVLAKEAFGLRYNSDCRGSALFRPRLGNGSHGTPQVPVDMPTF DEVVGPELAAGDWNGYLLKRFRPGALNVYTLHAEVEGIAFANDFRALLKAAREQGILFLTLGDRLPADPRQLPAGNLVRGSLAGRQGWLGVQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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