Pseudomonas oryzihabitans NBRC 102199, POR01S_RS07915

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like - - 109 305 2.07079E-46
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 107 313 1.1E-30
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 20 103 4.3E-23
Gene3D G3DSA:3.40.190.10 - - - 116 309 3.8E-41
Gene3D G3DSA:3.40.190.10 - - - 177 282 3.8E-41
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 58 69 1.3E-9
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 109 314 1.3E-31
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 17 101 6.5E-25
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 20 99 1.15E-22
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 22 81 1.3E-22
NCBIfam TIGR03418 JCVI: putative choline sulfate-utilization transcription factor IPR017786 Transcription factor, choline sulphate-utilisation, putative 21 312 3.1E-112
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 22 315 2.2E-65
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 37 48 1.3E-9
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 48 58 1.3E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.