Pseudomonas oryzihabitans NBRC 102199, POR01S_RS07850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCACGGCGCAACCGGATCATCAGCGGTCTCAGCCTGGGTACCCTGGTGGTGGAGGCCAGTCCTTCCAGCGGTTCGCTGATCACCGCGCGCCTGGCCGCC GAACAGGGCCGCGAGGTGTTCGCCCTGCCCGGCTCCATTCATCATCCCGGGGCTCGCGGCTGTCACCAGCTGATCCGCGAGGGCGCGCAGCTGGTGGAAG GCGTTGAACACATTCTCGAAGCCCTGCAGGGCTGGCGTAGCCTGGCCCCGCTCGCTACCACCGCGGCGGTCGAGGAGCATCCCCTGTTGCGCCAGCTGGC CGCCGGACCGCTCAACAGCGAAGAACTGGCGCGGCTCTGCGAGCTGTCGCTGCCGGAGGTGCTGGTCCAGCTGACCGAACTGGAGCTGGAAGGCCGGATC GTGGCGCAGCAGGGCAGCTGGTGTCGCCTCGGCTAGCGGGGGATGACTGGCATCGGCGGCGCGCTCGGGTAGACTTCAGGGATTTGGCGGAGGCAAGGCG
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| DNA Sequence for Gene |
>POR01S_RS07850
ATGCACAACAGCTGGCGAGTGCGGCAGGCGGCGCGAATCGTGCGCGAGGGGGGCGTCCTGGCCTACCCCACCGAGGCCGTCTGGGGCCTGGGCTGCGATC CCTGGGATCAGGCCGCGGTCTATCGCCTGCTGATGCTCAAGCATCGGCCCATGGAAAAGGGTCTGATCCTGGTGGCCGACAACATCCGCCAGTTCGACTT CCTGCTGCACGATCTGCCGGAAGAGTCCCTGGCCAAGCTGGCCAGCACCTGGCCGGGGCCCAACACCTGGCTGGTGCCGCACCACAATCGCCTGCCCGGC TGGGTGACCGGCGCCCATGCCACCGTGGCGCTGCGAGTCTCCGAGCATCCCCTGGTGGGCGAACTCTGCGCCCTGACCGGGCCGCTGATCTCCACCTCGG CCAATCCCGCCGGTCGCCCGGCCGCCCGCACGCGGTTGCGGGTTCAGCAATACTTTCCCAATGGCCTGGACGGCATCCTCACGGGTGAACTGGGCGGGCG CAAGAATCCCAGCGTGATTCGCGACCTGGTGACCGGCAAGGTCTTCCGACCCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCAGTCCAGCAGCTGGCGCAGCAACCGCGCCAGGGCATCGATCTGGAACGGCTTGGCCAGCGAGGGCTCGCCGTTCGGCGTCGGGCGCTCGGCGTGACC GCTGACGAACAGCACCGGCAGCTCCGGCCAGCGCTCGCGCAGGCGCCCTGCCAGCTCGGCGCCATCGAGATCCGGCAGGCCGAGATCGGTGATCAGCAGG TCACAGGGCAGGTCGCCGTCGACCAGGGTGAGCGCCGCCGATGCACTGGCCGCGGTGCGCACGCGATAGCCCAGCTCGGTGAGCATCTCGCGCAACAGCA GCCGCACCGAGACATCGTCTTCCACCAGCAGCAGGCGTTCGCCCCGACTCTGGGCGATGGCCGCCTGGGGCGTCGCGCTCGCCGCCGGCCGCTCGGGCTG GGCACAGGGCAGCCAGAGACTGACCCGGGTGCCACTGCCCAATTCACTCTCCAGGGTCACGTGGCCACCGGACTGCTTGATGAAGCCATAGAGCATCGAC
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| Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MHNSWRVRQAARIVREGGVLAYPTEAVWGLGCDPWDQAAVYRLLMLKHRPMEKGLILVADNIRQFDFLLHDLPEESLAKLASTWPGPNTWLVPHHNRLPG WVTGAHATVALRVSEHPLVGELCALTGPLISTSANPAGRPAARTRLRVQQYFPNGLDGILTGELGGRKNPSVIRDLVTGKVFRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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