Pseudomonas oryzihabitans NBRC 102199, POR01S_RS07400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATCATCGGCAACGACCTGGCCCTGACCCTGGCGGCCGAGGGTGGCCAGCTGCAGCTCAACGTCATGGAGCCCCTGATCGCCTACAAGATCTTCGACTC CATCCGCCTCTTGCAGCGCGCCATGGACATGCTGCGCGAGCACTGCATCACCGGCATCACCGCCAACGTCGAGCACTGCCGCCGCCAGGTGGAGCATTCC ATCGGCCTGGTCACCGCGCTCAACCCCTACCTGGGCTACGAGACTTCCACCCGCATCGCCAAGACGGCGCTGGAAACCGGTCGCGGCGTGCTGGAGCTGG TGCGCGAGGAGAATCTGCTGGACGAGGCGACCCTGGACGACATCCTGCGCCCGGAAAACATGATCGCCCCGAGACTCGTACCGCTGAAAGCCAAGGTCTG AGTCCCACACGCCAGACCTGAGCGGTAACCGACGGCAACTCCCCGCGGGCGCGGTATCCTTCTTGCTTGGAAGGCTGCCACCGCCCCGGGGAGTTTTCGC
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| DNA Sequence for Gene |
>POR01S_RS07400
ATGCGTCAGTCCGGTCTGATCAATCTCAACCTGGTGTCCCTGGTCCTCCAGCAACTGGCGGCCGACACGCCCGCCCGGGCGGCGCCCCTGCTGGCCGGCA GCGGCCTGCGGCTGGACGATCTCGAACAGCCCCATCGGCTCATCACCCTGGCCCAGGAACAGCGGGTCATCGCCAACGCCCTGCCGATGGCACCGCCCGA ACTGGGGCTGCTCCTGGGCTGGCGGCTGCGCGTCTCCGGCTACGGCCTGCTCGGCTATGCCCTGCTCAGCGCCCCGACCCTGGGCGCCGCGCTGCAGGCG GCCCTGGCCCACCAAAGCCTGCTGGGCGCCTATTTCACCCTGCGCCTGGAGCGCCACGGCGAATTGGCCTGGCTCAGGGCCGACGACCATCCCTTCGCGC CGGAGCTGGAGCGCTGCAACGCCGAGTGCTGTCTGGCGTCGCTGCTGGCGATCTGCTGCGACCTCCTGGGTACGTCCCTGCCGCTGGTGCAGGTGGCCTT TCGGCACGCCGAGCCGGTCTATCGCGCGCGCTATGGCGACTGCTTCGGCGCCACGCCCCTGGCCTTCGCCGCCGCCTTCAACGGCCTGGCCTTTCCCGCT GCCTGGCTTGATCGCGGGCTGCCACTGGCCGATCCGGTGACCCATCGCGACGCCCTGGAGCAGTGCGGGCGTCTCGCCCCCGAACAGGATCGCCAGCGCG CCCTGCTCGCCCGCATCCGCACCCTGCTGGGTGCGGACCTTGCGGCCCCGCCCTCCTTCGCGGCCCTGGCCGGCCACCTCGGCATGGCGCCGCGCAGCCT GCGTCGCCACCTGCAGGCCGGCGGCAGCGGCTATCAGCAATTGCTGGACGAGTTGCGTTTCGCGCGGGCGCGCGACCTGCTGGCCCAGGAGCGGCTGCCC ATCTATCGCATCGCCGAGGCGATGGGTTTCAGCGAGACGGCCAGCTTCCGCCATGCCTTCCGCCGCTGGAGCGGCCAGTCGCCGCGGGGTTATCGACTCT AG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCCGGCGTATGCTGAGCGCTTCCCGTCCCCATGGAGGATTCCCCATGCCCTCGCTGACCCTGCTCGCGGACCGCGGCCAACCCACCGATCAATACCGC CTGCCGGCGGAAAAGCGCCTGGCAGGCGATCCGCTACAGAGCCTCTGGCTCGACTACGAGGATGGCAGCGGCGTGTTCGCCGTCGGCCATTGGCACAGCG AGGTGGGCAAGTGGCGGGTGAATTACACCGAAGAGGAGTACTGCCAGATCCTCGAAGGGGTGAGTCTGGTCACCGATGACCAGGGCCACGCCACCCGTCT CGGGCCCGGCAGCAGCTTTGTCGTGCCGCGCGGCTTCCAGGGCACCTGGGAGGTGCTGGAGCCGACCCTGAAGCGCTTCGTGGTCTACGAAGCCAAGGGC GGCTGATGGCCGCCGCCGGGCGCAATCTGGCCGGATCTATCCCCTTTTGGCCGCAGCGCCTCTCGTCGCGGGCCGCCGGGCTGGCAAGAATCTGGAGAGA
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MRQSGLINLNLVSLVLQQLAADTPARAAPLLAGSGLRLDDLEQPHRLITLAQEQRVIANALPMAPPELGLLLGWRLRVSGYGLLGYALLSAPTLGAALQA ALAHQSLLGAYFTLRLERHGELAWLRADDHPFAPELERCNAECCLASLLAICCDLLGTSLPLVQVAFRHAEPVYRARYGDCFGATPLAFAAAFNGLAFPA AWLDRGLPLADPVTHRDALEQCGRLAPEQDRQRALLARIRTLLGADLAAPPSFAALAGHLGMAPRSLRRHLQAGGSGYQQLLDELRFARARDLLAQERLP IYRIAEAMGFSETASFRHAFRRWSGQSPRGYRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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