Pseudomonas oryzihabitans NBRC 102199, POR01S_RS06475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGGGCTCTATGCCCGGCTACGGCTGGTGGGCAGCGGCACCTACGAAGGCACCCTGATCCAGGACGCCGCCGTGGGCACCGACCTGGGCAAGAAATTCGT GCTGGTGGTGGACGGCCAGAGCAAGACGGCCTATCGCAACGTCGACCTGGGTCCGCGCCTGGAAGGCCTGCGCATCGTGCGCAAGGGCCTGGAAGCCGGC GATCGCATCGTGGTCAATGGCCTGCAGCGGGTGCGTCCGGGCATGACCGTCGACGCCCAGTCGGTGCCCATGGCCGATGCCACCACTCTGGCCGCCCTCA AGCGCCAGCGCGACGCCGTCCTCGCCAGCCTGCCGGCGCCCACCCAGCCGCTCAAGGTGGGTAGTCGCTAACCGACGCCGTATCCCGCTTCCCAGATCCG ATCGACAACGCGACCTCAGAGGTCGCTCCTGCCTCCACCGGGAGGCGGGAGCGACCCCGTGTGGCTGCGTTCTGTACGCCTCCTTGCCAGGACATTTCCG
DNA Sequence for Gene
>POR01S_RS06475
ATGAACTTCTCCCAGTTCTTCATCCGCCGGCCGATCTTCGCCGCCGTGCTCTCGCTGATCATCCTGATCGGCGGGGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCCGAGGTCGTCCCGCCCACCGTGGTGGTGCGCGCCACCTTCCCCGGCGCCAACCCCAAGGTGATCGGCGAGACCGTCGCCGCGCCCCT GGAGCAGGCCATGAACGGCGTGGAGCACATGCTCTACCTGTCGTCCCAGTCCACCGCCGACGGCAAGCTGACCCTGACCATCACCTTCGCCCTGGGGACC AATCTGGATACCGCCCAGGTGCAGGTGCAGAATCGCGTCACCCGCACCCTGCCCAAGCTGCCGGAAGAGGTGCAGCGCCTCGGCGTGACCGCCGACAAGG CTTCGCCGGACCTGGCGATGGTGGTGCACCTGACCTCGCCGGATCAGCGCTACGACATGCTCTATCTGTCCAACTACGCCCTGATCAACGTCAAGGACGA GCTGGCGCGGCTGGACGGCGTGGGCGACGTCCAGCTGTTCGGCATGGGCGACTATTCCCTGCGCGTCTGGCTCGATCCGGACAAGGTGGCCTCGCGCGGC CTGACCGCCAGCGACGTGGTCACCGCCATCCGCGAGCAGAATCGCCAGGTCGCCGCCGGTGCCCTCGGCGCGCCGCCGGCCCCGGGCAGCACCAGCTTCC AGCTGGCCATCAACACCCAGGGCCGCCTGGTGGACGAGGAAGAATTCGCCAACATCATCGTGCGCGCCGGCAGCGACGGCCAGATCACCCGGCTGCGCGA CATCGCCCGCATCGAACTGGGGTCCAACCAGTACGCCTTGAGGTCCCTGCTGAACAACCAGCCGGCGGTGGCCATCCCGATCTTCCAGCGCCCCGGCAGC AACGCCATCGACCTGTCCAACCAGGTGCGCGCCAAGATGGCCGAGCTCAAGCAGAGCTTCCCCCAGGGCATGGACTACGAGATCGTCTACGACCCGACCA TCTTCGTACGCGGCTCCATCGAAGCCGTGGTGCACACCCTGTTCGAAGCCATCATCCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCCATCATTCCCTTGGCGGCGGTGCCGGTGTCGCTGATCGGCACCTTCGCGGTGATGCACGCCTTCGGCTTCTCGCTCAATGCGCTGTCCTTGTTCGGC CTGGTGCTGGCCATCGGCATCGTGGTGGACGACGCCATCGTGGTGGTGGAAAACGTCGAGCGCAACATCGGCCTCGGCCTCGATCCGGTGGCCGCCACCC GCCGTGCCATGGGCGAGGTGACCGGGCCCATCATCGCCACCGCCCTGGTGCTCTGCGCGGTGTTCGTGCCGACCGCCTTCATCTCCGGTCTCACCGGGCA GTTCTATCGCCAGTTCGCCCTGACCATCGCCATCTCCACGGTGATCTCGGCCTTCAATTCCCTGACCCTGTCGCCGGCCCTGGCCGCGGTGCTGCTCAAG GGTCACGACGCACCCAAGGACCGTTTCTCGCGACTGCTCGACCGGCTGTTCGGCGGCTGGCTGTTCGCCCCCTTCAACCGCTTCTTCGAGAAAGCCAGCC ACGGCTACGTCGGCGCCGTGCGCCGGGTACTGCGCGGCGGCTCCATCGTGCTGGTGCTCTATGTGGTGCTGCTCGGCCTGACCGGCCTGGGCCTGGTGAA GACGCCGACCGGCTTCGTGCCGCCCCAGGACAAGCAGTACCTGGTGGCCTTCGCCCAGTTGCCCGATGCCGCCACCCTGGATCGCAGCGAAGAGGTCATC CGCCGCATGTCGGCCATCGCCCTCAAGCATCCGGGCGTGGAAAGCACCGTGGCCTTCCCCGGCCTGTCCATCAACGGCTTCACCAACAGCCCCAACAGCG GCATCGTCTTCGTGACCCTGAAGCCCTTCGAGGAGCGCCGTGATCCCTCGTTGTCCGCCGGTGCCATCGCCGCCCAGCTGAACGGCGAATTCGCCGCCAT CCAGGAATCCATCATCGCCATCTTCCCGCCGCCGCCGGTGCAGGGACTGGGCAGCATCGGCGGCTTCCGCCTGCAGGTGGAGGACCGCGGCAACCTGGGT TACGAAGAACTCTACGCCCAGACCCAGAGCGTGCTGGCCAAAGCCCGGCAGCTGCCGGAACTGGCGCCGGAGTCGCTGTTCACCAGCTACCAGGTCAACG TGCCGCAGATCGATGCCCACATCGACCGCGAGAAGGCCAAGACCCACGGGGTGCCCATCGACGCCATCTTCGACACCCTGCAGGCCTACCTGGGCTCGGT CTACGCCAACGACTTCAACCGCTTCGGCCGTACCTTCCAGGTCAACGTCCAGGCCGACCAGCGCTTCCGCCTGGAACCCGAGCAGATCGGCCAGCTCAAG GTGCGCAACGACCGCGGCGAGATGGTGCCCCTGTCCACCTTCGTCAAGGTCAGCGACACCGCCGGTCCCGACCGGGTGATGCACTACAACGGCTTCCTCA CCGCCGAGATCAACGGCGCGCCGGCGCCGGGCTACAGCTCCGGCCAGGCCCAGGCGGCCATCGAGGGGCTGCTCAAGCAGGAATTGCCCAACGGCATGAC CTTCGAATGGACCGAGCTGACCTACCAGCAGATCCTCTCCGGCAATACCGCCCTGCTGGTGTTCCCGCTCTGCGTGCTGCTGGCCTTCCTGGTGCTGGCC GCCCAGTACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCCATGACCCTGCTCTCGGCCATCACCGGGGTGATCCTGGCCGGCAGCGACA ACAACATCTTCACCCAGATCGGCCTGATCGTGCTGGTGGGCCTGGCGTGCAAGAACGCCATCCTCATCGTCGAGTTCGCCAAGGACCAGCAGGCCACCGG CAAGGACCGCGTCGCCGCGGTGCTGGAGGCCTGCCGCCTGCGCCTGCGGCCCATCCTGATGACCAGCTTCGCCTTCATCATGGGTGTGGTACCCCTGGTG ACCTCCACCGGCGCCGGCGCCGAGATGCGCCACGCCATGGGCGTCGCGGTGTTTTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGCTGCTCACGCCGC TCTTCTATGTGCTGGTACGCGCCTTCGTGGAGCGTCGCCAGGCTCGCTCCGCCGTTGCCCAGGAGGCCCAGGCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGCTTTCGCTCCCCTGCTGCTGGCGCTGGCGGTCTCCGCCTGCGCCGTCGGCCCGCACTACCAGGCGCCTGAGCAGGCACCCGTCCAGCTCAAGGCCAG CCAGCAGCCCAGCGCCTACGACCAGGGCCGCTTCGAGGCGCTCTGGTGGCGCCAGTTCGAGGACCCGACCCTCAACGCCCTGGTGGCCAGCAGCCTGGAC GGCAACCGCGAATTGCGCGCCGCCTTCGCCCGGCTGCGCGCCGCCCGCGCCCTGCGCGACGACGACGCCAACGACCTCTATCCGACGATCACCAGCCGTG CCAGCAGCCAGCTCGGCAAGGCCCAGCAACCCGGTTTCACCGAGGAACGGGTCAACAGCGACCGCTACGACCTGGGTCTGGACATGGCCTGGGAGCTGGA CCTGTTCGGTCGGGTCCGCCATGCCCTGGAAGCCAGCGATGCCCGCGCCGAGGCCGCGGCGTCGGATCTCGCCGCGCTGCAGGTCAGCCTGATCGCCGAG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSQFFIRRPIFAAVLSLIILIGGAISLFQLPISEYPEVVPPTVVVRATFPGANPKVIGETVAAPLEQAMNGVEHMLYLSSQSTADGKLTLTITFALGT NLDTAQVQVQNRVTRTLPKLPEEVQRLGVTADKASPDLAMVVHLTSPDQRYDMLYLSNYALINVKDELARLDGVGDVQLFGMGDYSLRVWLDPDKVASRG LTASDVVTAIREQNRQVAAGALGAPPAPGSTSFQLAINTQGRLVDEEEFANIIVRAGSDGQITRLRDIARIELGSNQYALRSLLNNQPAVAIPIFQRPGS NAIDLSNQVRAKMAELKQSFPQGMDYEIVYDPTIFVRGSIEAVVHTLFEAIILVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHAFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLDPVAATRRAMGEVTGPIIATALVLCAVFVPTAFISGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLK GHDAPKDRFSRLLDRLFGGWLFAPFNRFFEKASHGYVGAVRRVLRGGSIVLVLYVVLLGLTGLGLVKTPTGFVPPQDKQYLVAFAQLPDAATLDRSEEVI RRMSAIALKHPGVESTVAFPGLSINGFTNSPNSGIVFVTLKPFEERRDPSLSAGAIAAQLNGEFAAIQESIIAIFPPPPVQGLGSIGGFRLQVEDRGNLG YEELYAQTQSVLAKARQLPELAPESLFTSYQVNVPQIDAHIDREKAKTHGVPIDAIFDTLQAYLGSVYANDFNRFGRTFQVNVQADQRFRLEPEQIGQLK VRNDRGEMVPLSTFVKVSDTAGPDRVMHYNGFLTAEINGAPAPGYSSGQAQAAIEGLLKQELPNGMTFEWTELTYQQILSGNTALLVFPLCVLLAFLVLA AQYESWSLPLAVILIVPMTLLSAITGVILAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKDQQATGKDRVAAVLEACRLRLRPILMTSFAFIMGVVPLV TSTGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPLFYVLVRAFVERRQARSAVAQEAQA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site