Pseudomonas oryzihabitans NBRC 102199, POR01S_RS11300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCCAGGAGATCATGCTGAAGGTGCTTTACGGTTTGAAGAATTTCGAGGGGAAATCGAAATTCAAGACCTGGCTGTACAGCATCACCTACAACGAGTGC ATCACTCAGTACCGCAAGGAACGCCGCAAGCGGCGGCTGGTGGAGGCATTAAGTCTGGATCCGATGGAGGAAGCCTCCGAGGAAAGGGCGCCGAAGCTGG AAGAAAAGGGAGGGATGGATCGCTGGCTGGTCCATGTGGGTCAGGTCGATCGGGAGATCCTGGTGCTGCGCTTCGTCGCAGAGCTGGAGTTCCAGGAGAT CGCCGACATCATGCACATGGGCCTCAGCGCCACCAAGATGCGGTACAAGCGGGCACTCGACAAACTGCGTGACAAGTTCGCAGCTGAAGTTGAGGGCTGA CCGGATGTGTCAGCCGTAAGTTTTTGAACTTCACGAAAACTTGTTGTCGAAGCCTCCGGAGATTGCCGGAATTAGTACCACTAAAATGGGGATACAAAGG
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| DNA Sequence for Gene |
>POR01S_RS11300
ATGAAACTGAAGAGCACCTTGGGCGTCGTGATCGGCTCCCTGCTGGCAAGCGCCTCGCTGAGCGCCCTGGCACAAGGTCAAGGCGCCGTCGAGACCGAGC TGTTCGGCAGCCGTCTGTTCACCGACAGCCAGCGCAACATGACCAACGCTGACCTGTACGGCGGTTCCGTTGGCTACTTCCTGACCGACGACGTTGAGCT GGCGTTGTCCTACGGCGAGTACCACAACGCCCGTGGCGACCACGACCTGGGCCACAAGAACATCAAGGGCAGCCTGGCTGCTCTGGACGCCTACTACCAC TTCGGTCAGCCCGGCGTCGGCCTGCGTCCGTACGTATCCGGTGGCTTCGCTCACCAGTCCATCAGCAACCGCGACATCAACGAAGGTGGTCGTGATCACT CCACCTACGCCAACCTGGGTGCCGGCCTGAAGTACTACTTCACCGAGAACCTGTATGCCCGTACCGGCGTACAAGCCAACTACAACATCGACTACGGCGA CACCGAGTGGAGCGCTGCTGTAGGTGTTGGTCTGAACTTCGGTGGTTCCACCAAGAAAGAAGTCGCTCCGGCTCCGGCTCCGGCCCCCGTTGCTGACGTC TGCACCGATTCCGACAACGACGGCGTTTGCGACAACGTCGACAAGTGCCCGAACACCCCGGCTAACGTCACCGTTGACGCTACCGGCTGCCCGGCTGCCG CCGAAACCGTTCGCGTCGAGCTGGACGTGAAGTTCGATTTCGACAAGGCCGTGGTCAAGCCCAACAGCTACGCCGACATCAAGAACCTGGCTGACTTCAT GCAGCAGTACCCGCAGACCTCGACCACCGTTGAAGGCCACACCGACTCCGTCGGCACCGACGCCTACAACCAGAAGCTGTCCGAGCGTCGTGCCAATGCC GTGCGTAACGTCCTGGTCAACCAGTACGGCGTGCAGGGCAGCCGCGTGAACGCTGTTGGTTACGGTGAATCCCGCCCGGTTGCTGACAACGCCACCGAAG CCGGTCGCGCCGTCAACCGTCGCGTAGAAGCCGAAGTCGAAGCTCAGGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCTGATCCAGACTCCAAAAAAGCCCGCCTAGTGCGGGCTTTTTCATGCCTGGTGTTTCTTGTGTCCGGCCCTGGTTCAGGTTCTGCGGACACAAAA AACCCCGCCGAGGCGGGGTTCTTCCTGACGGATCGATCAGCCGCGATCGTCCGGGATGTCGCGCTGGGCGACGCCGGTGTACAGCTGACGCGGCCGGCCG ATCTTGTAGGGACCGGACAGCATTTCCTGCCAGTGCGAGATCCAGCCGACGGTCCGCGCCATGGCGAAGATCACGGTGAACATGCTGGTCGGAATGCCGA TCGCCTTGAGGATGATGCCGGAATAGAAGTCCACGTTCGGATAGAGGTTGCGCTCGACGAAGTAGGGGTCCTTGCGGGCCAGTTCTTCCAGGCGCATGGC CAGTTCCAGTTGCGGATCGTTGATGCCCAGCTCGGCCAGGACTTCGTCGCAGGTCTGCTTCATCACCGTGGCGCGCGGATCGAAGTTCTTGTAGACGCGA
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| Amino Acid Sequence |
>porin
MKLKSTLGVVIGSLLASASLSALAQGQGAVETELFGSRLFTDSQRNMTNADLYGGSVGYFLTDDVELALSYGEYHNARGDHDLGHKNIKGSLAALDAYYH FGQPGVGLRPYVSGGFAHQSISNRDINEGGRDHSTYANLGAGLKYYFTENLYARTGVQANYNIDYGDTEWSAAVGVGLNFGGSTKKEVAPAPAPAPVADV CTDSDNDGVCDNVDKCPNTPANVTVDATGCPAAAETVRVELDVKFDFDKAVVKPNSYADIKNLADFMQQYPQTSTTVEGHTDSVGTDAYNQKLSERRANA VRNVLVNQYGVQGSRVNAVGYGESRPVADNATEAGRAVNRRVEAEVEAQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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