Pseudomonas oryzihabitans NBRC 102199, POR01S_RS15360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCATACCCCGCCGCCCTGGCTGGATACCCTCGCCGAGCTGGGTTTCCCGGTGCGCTGGACCGACGACATCGACGCCCGCCTGTGGCGCAAGCTGGCGATC AACTGCGCCATCAATCCGCTGACCGTGCTCTATCGCTGCCGCAACGGCGAACTGCGCCAGCATCTGCCGGAGGTCACGGAGCTCTGCGACGAACTCGCGG CGCTGCTGGAAGCCATGGGACTCGCCCCGGCGGCCCAGGGGCTGCAGCAGGAGGTCGAGGCGGTGATCGCCGCCACGGCCAACAACCGCTCCTCGATGCT GCAGGACGTGGAGCGCGGCCAGCGCACCGAGGTGAGCTACCTGCTCGGCCACGCCCTGCCGATCGCCGGACGGCTGCGCCTGCCGGTGCCGCACCTGACC GAGCTACAGCAGCGACTGCGAGCCCGGCTCGCGGAGCGCGGATTGCCCGAGGACTAGCTGCGGGCTACCCTGCCCGCTTCCCTGTTGCCACGGCTGCGCC
|
|
| DNA Sequence for Gene |
>POR01S_RS15360
ATGATCCTCGCCAAACGCCTGAAGAATCTCCCGGTCGGCCGCAAGTTGCTGGCTGCCCTGCTGGTGATGATGATCGCGGTGCTGGTGGTGGCCAACGTGA CCTTTATCAGCGCCGCCTACTGGATCTCCCAGGAGAGCGTGGCGCCCCAGGCGCTGCAGACCCTGGGCCGGCTGTTCGCCAGCCCGGTGCTCAGCCGCGA GGTGCTGGCCTCGCCGGCGGCGGCCGAGGTGCAGCTGCGCCAGCTCGACGGCTATGCGCCGCTGCGCCTGGCCGCGGTCTACGACAGCCAGGGCCAGCGC CTGGCCGAGTTGCACAACGGCGATCGCCTGCAGGTGCCGGCGCGCTTCGAAGAGCTGCAGACCTGGCGCCTGCGCGAATTCCGCACCAATCTGCTGGTGG AGCTGCCGCGTCCCGAGGGCGCTCCCGGGCATCTGCTGCTGGTGGCCAGCAGCGAACTGCCGGGGGCCTTCTACCGCGGCACCCTGACCGCCAGCCTGGC GATCCTGACCTTCAGTATCCTGCTCTGGCTGGTGGTGGCGCGGCAGATCAAGAGACTCATCACCCTGCCGATCCGCGAACTGGAAGAACTCTCGCGCCAG GTGACCCGCGAGGAGAACTATTCGCTGCGCGCCAGCAAGGGCAGCGAAGACGAACTGGGCCGCCTGGCGGAATCCTTCAACACCATGCTCGGCCGCATCC AGGGCCGCGAGCAGCAACTCAAGCGCGCCCGCGACGACGCCCAGTACGCGGTGCTGCAGGCCCAGAGCCTGGCCGAGGAGACCCGCCGCTCCAACCGTAA GCTGGAGTTGGAGGTGCAGGTCCGCGGCAAGATCGAGAAGAAGCTCACCGGCTTCCAGAACTACCTCAACAGCATCATCGACTCCATGCCCTCGGCGCTG ATCGCCGTGGACGAGCAGTTCTACGTCACCCAGTGGAACCAGGAGGCCACCCACCTCTCCGGCACCCAGCTGGACGAGGCCCTGAACCAGCCGGTGTTCC TGGCCTTTCCCTCGCTCAAGCCGTTCCTGCCGCAACTGAGTCGCACCGCCGAATTGCTGCGGGTGGAAAAGGTGGAACGGGTGACCTGGGCGCTGACCGA TACCCCGCGGCACTACACCTTGACCTTCTACCCGCTGATGGGCGGCGCCGGGCGTGGCGTGGTGATCCGCATCGACGACATCACCCAGCGCCTGAACATG GAAGAGATGATGGTGCAGTCGGAAAAGATGCTCTCGGTGGGCGGCCTCGCCGCCGGCATGGCCCACGAGATCAACAATCCGCTGGGCGCCATCCTGCACA ACGTGCAGAACATCCGCCGGCGGCTGTCGCCGGAGTTGCCGAAGAACGTCGAGCAGGCCGCCGAATCCGGTGTCGAGCTCAATGCGGTGAACTGCTACCT GGAGAGCCGGCAGATCCCGCGGCTGCTCGACGGCATCCACCAGGCCGGCAGCCGCGCGGCCAAGATCGTCAGCCACATGCTGGCCTTCAGTCGCCGCAGC AATCGCAAGATGGAAGCCAGCGAATTGCCGCCGCTGATCGACCAGGCCATCGAGATCGCCGGCAACGACTTCGACCTGGCCGAGGGCTTCGACTTCCGCA CCCTGTCGATCATCCGCGAATTCGATCCGGCGCTGGGACCGGTGCCGGTGATCGGCAACGAACTGGAGCAGGTGCTGCTCAACCTGCTGAAGAACGCCGC CCAGGCCATCCACCTGCGCGACGACGAGGAAGAAGGCGAATACGGCCGCATCACCTTGCGCACCAAGCTGCGCGGCGGCTGGGCCGAGATCCAGGTGGAA GACAACGGCATCGGCATCCCCGAGGACATCTGCAAGCGCATCTTCGAGCCCTTCTTCACCACCAAGGAGGTGGGCCAGGGCACCGGTCTGGGCCTGTCGG TGTCGTATTTCATCATCACCAACAACCACAAGGGGCAGATGGAGGTGCACTCCACGCCTGGCGTAGGGACCTGCTTCACCCTGCGCCTGCCCCTCGTCCA GGCCGACTTCGACGCGGCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACCTCATCAGGAGCTGCGCCATGGGTTTTCGCCTCACCGAGATCTACACCCGCCAGGGCGACGCCGGCGACACCGGCCTGGCCGACGGCAGCCGGGTAC CCAAGGACCATCCGCGCATCGAGGCCATTGGCGCGGTGGATGAGCTCAACAGTGCCCTGGGTCTGCTGCTCGCCGAGCTGGCCGAGGACGCCCGCCTGGC CGAGGTGAGCGAGCTTCTGGCGCCCTGTCAGCACCGCCTGTTCGACCTCGGTGGCGAACTGGCCATGCCCAGCTATCGCGCCCTGCAACCGGTGGAGATC GAACGCCTGGAGGGCGCCATCGATCGGTGGAACGCCGAGCTGGGGCCGTTGGAGAATTTCATCCTGCCCGGCGGCTCGCGCGCCGTGGCCCAGGCCCATG TCTGCCGCACCCTGGCGCGCAGCGCCGAGCGGCGCTGCCGCAGCCTGCACGCGGTGGAGCCGCTGGAGGGCCAGGGCCTGCCCTATCTCAATCGCCTGTC
|
|
| Amino Acid Sequence |
>histidine kinase
MILAKRLKNLPVGRKLLAALLVMMIAVLVVANVTFISAAYWISQESVAPQALQTLGRLFASPVLSREVLASPAAAEVQLRQLDGYAPLRLAAVYDSQGQR LAELHNGDRLQVPARFEELQTWRLREFRTNLLVELPRPEGAPGHLLLVASSELPGAFYRGTLTASLAILTFSILLWLVVARQIKRLITLPIRELEELSRQ VTREENYSLRASKGSEDELGRLAESFNTMLGRIQGREQQLKRARDDAQYAVLQAQSLAEETRRSNRKLELEVQVRGKIEKKLTGFQNYLNSIIDSMPSAL IAVDEQFYVTQWNQEATHLSGTQLDEALNQPVFLAFPSLKPFLPQLSRTAELLRVEKVERVTWALTDTPRHYTLTFYPLMGGAGRGVVIRIDDITQRLNM EEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSPELPKNVEQAAESGVELNAVNCYLESRQIPRLLDGIHQAGSRAAKIVSHMLAFSRRS NRKMEASELPPLIDQAIEIAGNDFDLAEGFDFRTLSIIREFDPALGPVPVIGNELEQVLLNLLKNAAQAIHLRDDEEEGEYGRITLRTKLRGGWAEIQVE DNGIGIPEDICKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHKGQMEVHSTPGVGTCFTLRLPLVQADFDAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|