Pseudomonas oryzihabitans NBRC 102199, POR01S_RS17630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGCTTGCCCTGGTAGGCCCATTGCTGGCTGCCGTCGTCGCGAGTGACCAGGCTGTAGCCATCGGCAGCCTTGGCGCCCGCTTCGGCTGTCAGCGGTG GCCAGTTCTGGGCACAGGGACCGTTGCAGGCGGACTTGCCCGCGCTGTCCTTGGCGAAGGTGTAGAGCGTCATGCCCTTGCCGTCGACGAGCACGTTGCC CAGGGCGGTGTCGGCGACCTTGGTCGGCGCGGCGGCCAGGGCCAGGCTGGCGAAGGAGAGAGTTGCAGCGATGATCAGCAGGTGTTTCAGCATGGTCGAC CTCTTGTGCTTGTTATCAGGGCGAACGGAGCCTCGGCTACTTGGGCATCCGCAAAGCCAGGGATGCCTTGCGCACTCTAGTCGAAATCCTGCCGTCCGGG GCCGGCGCAGCGCCGGGTATCCGCGACGGCCATCGCTCCGGCGGCGCGGCCCCCCGTGCTAACCTTGCCGCCGTTCAATCTGCAGCGGAGCCCGCCTGTC
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| DNA Sequence for Gene |
>POR01S_RS17630
ATGCACATCCACATCCTCGGTATCTGCGGCACCTTCATGGGGTCGCTCGCGGTGCTGGCCAAGGAAGCCGGCCATCGCGTGACCGGCTCCGACGCCAACG TCTATCCGCCCATGAGCACCCAGCTGGAGGCCCAGGGCATCGAGCTGACCCAGGGCTACGATCCGGCCCAACTGGATCCAGCGCCGGACCTGGTGGTGAT CGGCAACGCCCTGTCGCGCGGCAATCCGGCGGTGGAATACGTGCTGGATAAGGGCCTGCCCTATGTCTCCGGCCCCCAGTGGCTGGCCGAGCACGTCCTG CAGGGCCGCTGGGTACTGGCGGTCGCCGGCACCCATGGCAAGACCACCACCACCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCT TTCTCATCGGCGGGGTGCCGCAGAATTTCGGCATCTCGGCGCGCCTGGGCGGCACGCCTTTCTTCGTGGTGGAAGCCGACGAATACGACAGCGCCTTCTT CGACAAGAGATCCAAGTTCGTCCACTACCGGCCGCGGACCACCATCCTCAACAACCTGGAATACGATCACGCGGACATCTTCCCGGATCTGGCGGCCATC GAGCGGCAGTTCCACCATCTGGTGCGGACCATCCCCAGCAGCGGCCTGATCATCCATCCCACCGCCGAAACGGCCCTGGTGCGGGTGCTGGAGATGGGCT GCTGGACCCCGGTGCAGACCACTGGCGCAGGTGGCCAGTGGCAGGCCCGCCTGCTGGCCGAGGACGGCTCGCGCTTCGAGGTGCTGTTCGAAGGCCAGGT GCAGGGCACGGTGAACTGGGAACTGACCGGCCAGCACAACGTGGCCAATGCCCTGGCCACCCTGGCCGCGGCTCGTCATGTCGGCGTGGTGCCGAGCCTG GGCGTCGCGGCCCTGAGCGAATTCCGCAGCGTGAAGCGACGCATGGAAAAGGTCGCCGAGGTGCGCGGCGTGACCGTCTACGACGACTTCGCCCACCATC CCACCGCCATCGCCACCACCCTGCAGGGGCTGCGTGCCCGGGTCGGCAGCGAGCGGATCATCGCCGTCATCGAGCCGCGCTCCAATTCCATGAAGCTGGG CGCCCACCGTGACGGCCTGCCGGCCAGCGTCACCGGCGCCGACAGCGTCATCTGGTACGCCCCGCCGAATCTGGGCTGGGACCTGGCCGGCACGGCCGAG GCCTGCGCCGTACCGGCCGTGGTCTGCGATTCCCTGGAGGCGATCATCACCCGGGTCCAGGCCGAGCTGGACGGCCCCACCCACGTGGTAATCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGCCGCCCTGGAGCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCGGCCCGGAACGCATCACCCTGGCGCTGACCGGCGCCTCCGGCTCCCAGTACGGCCTGCGCCTGCTGGACTGCCTGGTGCAGGAGGAGCGCGAGGT GCACTTCCTCATCTCCAAGGCCGCGCAGCTGGTGATGGCCACCGAGACCGACGTGGTGCTGCCGCCCAAGCCCCAGGCCATGCAGGCCTTTCTCACCGAA TATACCGGCGCGGCGCCGGGCCAGGTGCGGGTGTTCGGCCAGAGCGACTGGATGGCGCCGCCGGCGTCCGGTTCCAGCGCTCCGGCGGCCATGGTGGTCT GCCCCTGTTCCACCGGCACCCTCTCGGCCATCGCCACCGGTGCCAGCAACAACCTCATCGAGCGCGCCGCCGACGTGGCCCTCAAGGAGCGGCGGCAACT GATCCTGGTGCCGCGCGAGTCGCCGTTCTCCAGCATCCACCTGGAAAACATGCTCAAGCTGTCCAACCTGGGCGTGACCATCCTGCCGGCCTCGCCGGGC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKEAGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNALSRGNPAVEYVLDKGLPYVSGPQWLAEHVL QGRWVLAVAGTHGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGISARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTTILNNLEYDHADIFPDLAAI ERQFHHLVRTIPSSGLIIHPTAETALVRVLEMGCWTPVQTTGAGGQWQARLLAEDGSRFEVLFEGQVQGTVNWELTGQHNVANALATLAAARHVGVVPSL GVAALSEFRSVKRRMEKVAEVRGVTVYDDFAHHPTAIATTLQGLRARVGSERIIAVIEPRSNSMKLGAHRDGLPASVTGADSVIWYAPPNLGWDLAGTAE ACAVPAVVCDSLEAIITRVQAELDGPTHVVIMSNGGFGGLHGKLAAALEQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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