Pseudomonas oryzihabitans NBRC 102199, POR01S_RS20415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTCACCCTTTGAGTGACCGCAGGGTCACGGCCAGCGCCGTGGCTTGCGGCCCTGTTTTGCCCTCATCGGCGACCCATGGGTCAGCAATAGACGCCCCA AACCCGCTCCCAGCCGCGTCTACGACTTTTGTAGTGACTATACGAAAGCACTACAAAACTGAGTTGACGACGCCCTTATCTCCTGCAAATCTCTAGCTGC ACCGGACGCGAACCCCCTATCCATGCGGGTCGCGCCTGGGCTCCGGGTGACCCTCGGGCCGTCTTGCGTAGTGATGCTCAAGAGGCACTACAAGAGAAGA CGACTGAAATGCCGCGCTGCTCGAGGCAGCGTCGCCAGAGGTGACGTCCGGATCCATGCAGGAACGTACGGCGACATGACTCGACAGCTGGGCTGACCTT TCGCCTTCGCGACCGGCATCCGGGTGGCAACCGCCATCCCGCTGCCGGACGTTGGGAAAAGACTGGTACCCAAGCCAACCTCATCGAGAAGGATCGACTC
|
|
| DNA Sequence for Gene |
>POR01S_RS20415
ATGTCCGCTTACGAGAACGACGTTCAGGCCATCGCCGCCCTCAAGAACAGCACCGGCAATCACTGGAGCGCCATCAATCCGGAGTACGCAGCGAGGATGC GCCTGCAGAATCGCTTCAAGACCGGTCTCGACATCGCCCGCCACTGCGCGGCCATCATGCGCCGGGACATGGCCGCCTACGACGCCGACAGCAGTGCCTA CACCCAGTCGCTGGGCTGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCGCCATCAAGAAGCACCTGGGCAGCACGAAAGGCCGCTACCTCTATCTG TCCGGCTGGATGATCGCCGCGCTGCGCTCGGAATTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAGACCAGCGTGCCGGCACTGATCGAAGAGCTCT ATACCTTTCTGCGCCAGGCCGACGCCCGCGAGCTGGGCATGCTGTTCCGCGAGCTGGACGGCGCCCGCGCCGCCGACGAGAACGCCAAGGCCGCCGCCAT CCAGGCCAAGATCGACAACCATGAAACCCATGTGGTGCCGATCATCGCCGATATCGACGCCGGCTTCGGCAACGCCGAGGCCACCTACCTCCTGGCCAAG AAGATGATCGAGGCCGGCGCCTGCTGCATCCAGCTGGAAAACCAGGTCTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACGGTGCCCCACG AGGACTTCCTGGCCAAGATCAACGCCGTGCGCTACGCCTTCCTCGAACTGGGCGTGGACGAGGGCGTCATCGTCGCCCGCACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATCGCCGTGAGCAAGCAGCCGGGCGACCTGGGTGACCAGTACAACGGCTTCCTCGACTGCGATGAGGTGGACGCCAGCCAGCTGGGC AACGGCGATGTGCTGATCAGCCGTGGCGGCAAGCTGCTCCGGCCCAAGCGCCTGGCCAGCGGCCTGTTCCAGTTCCGTGCCGGCAGCGGTGTGGATCGCG TGGTGCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTGTGGATCGAGACCGAGAAGCCCCACGTCGGCCAGATCAAGGCCATGGTCGACCG CATCCGCGAGGTCGTGCCCAACGCCAAGCTGGTCTACAACAACAGCCCTTCCTTCAACTGGACCCTTAGCTTCCGCCAGCAGGTGTTCGACGCCCTGCAG GCCGAGGGCAAGGACGTCTCCGCCTACGACCGCGCCAAGCTCATGAGCGTGGACTACGACGACACCGAACTGGGGCGCCTGGCCGATGCGCGGATCCAGA GCTTCCAGCGCGATGCGGCGCGAGAGGCGGGCATCTTCCACCACCTGATCACCCTGCCCACCTACCACACCGCGGCCCTGTCCACCGACAACCTGGCCAA GGGCTACTTCGCCGAGGAAGGCATGCTGGCCTACGTCAAGGGCGTGCAGCGCCAGGAGATCCGCCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCC GGCTCCGACATGGGCGACGACCACAAGGAATACTTTGCCGGGGAGGCCGCGCTCAAGGCGGCGGGCAAGGACAACACCATGAACCAGTTCCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCACGGCCACTGCGGAGGACACGCTCATGAACCTGAACGACAACCCCAGCCTGGACGATCTCAAGCAACTCTTCGGCCGGCTCAAGGACAAGAACCACAA CCACATCCTCTGGGTCTGCGAGAGCGGCGCGGTGCACGTCGACCGCCTGCCCGGCGGCGAGACGCCCGAGCAGTTCGAGGAGCGCCATCCCAGCCTGCGC ATCCGCTTCAAGACCTACAACAAGGGCGGCGGCTACGTCGGCAAGTCGGCAGCGGCGGACGACAACTTCATCCGAAGCGTCCACACCGCCCTGCAGGAGC ACTGGCGCCTGGCCGGTCGGCAGCAGCAGCCGGCCTACGTGGATCGCTACTGCTAGCCATGAAAAAGGGCGCGACGGGTAGCTGACCACCCGCCGCGCCC TGCCCCACCTTCGAGGCGACTCGCCTGATCCTGGATGGCCCTCCCGGATCGAGCGAGTCGCCTCTTCCATTTACAGCACGAACAGGTCCACGAAGCGATG
|
|
| Amino Acid Sequence |
>isocitrate lyase
MSAYENDVQAIAALKNSTGNHWSAINPEYAARMRLQNRFKTGLDIARHCAAIMRRDMAAYDADSSAYTQSLGCWHGFIGQQKLIAIKKHLGSTKGRYLYL SGWMIAALRSEFGPLPDQSMHEKTSVPALIEELYTFLRQADARELGMLFRELDGARAADENAKAAAIQAKIDNHETHVVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQLENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDEGVIVARTDSLGAGLTKQIAVSKQPGDLGDQYNGFLDCDEVDASQLG NGDVLISRGGKLLRPKRLASGLFQFRAGSGVDRVVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVVPNAKLVYNNSPSFNWTLSFRQQVFDALQ AEGKDVSAYDRAKLMSVDYDDTELGRLADARIQSFQRDAAREAGIFHHLITLPTYHTAALSTDNLAKGYFAEEGMLAYVKGVQRQEIRQGIACVKHQNMA GSDMGDDHKEYFAGEAALKAAGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|