Pseudomonas oryzihabitans NBRC 102199, POR01S_RS21885

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01391	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	456	495	-
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	2.4E-41
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	9.4E-37
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	467	487	-
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	1.84579E-35
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	630	0.0
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	1.7E-108
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	611	635	-
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	6.63E-39
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	2.4E-47
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	2.6E-54
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	611	627	-
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	369	6.4E-41
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	108	-
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	1.4E-42
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	253	1.9E-42
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	506	626	9.0E-26
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	102	1.5E-37
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	110	242	5.1E-48
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	340	1.1E-17
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	420	0.0
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	427	1.2E-20
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	628	30.008326
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	502	627	4.1E-33
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	426	1.2E-10
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	114	-
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	491	634	6.7E-37
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	501	629	3.14E-31
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	622	0.0
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	2.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.