Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACCTCTTTCCTTAAGCACGGGATCCATCCCGGCCTGTTCCTCAGAGGAGCCCTATCATGGCACTGAGCGTTGAAGACAAAGCCCAGATCGTAAACGAGTT CAAGCAGAGCGAAGGCGACACCGGTTCCCCGGAAGTGCAGGTTGCCCTGCTGTCCGCCAACATCGACAAGCTGCAAGGTCACTTCAAGGCCAACGGCAAA GATCACCACAGCCGTCGTGGTCTGATCCGTATGGTCAACCAGCGTCGTAAGCTGCTGGACTACCTGAAGTCCAAGGACACCTCTCGTTACAGCGCACTGA TCGCTCGCCTGGGCCTGCGTCGTTAATACGATGCAGACCTGCTGCAAGCAGTCTGAAGCTGGAGGTCGGCTCGCGCCGGCCTCCGGCTTTTTTGCTTGAG AGGCCGACAGAATCGGCCTGCGTCACCCGGAGATCAGCGAGGGTCCGAATCCCTCTGGTCGCCCCCGTTTCCCCCAAGGCAATAAAGAGAAGGAAAGACT
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DNA Sequence for Gene |
>POR01S_RS22090
GTGAATCCAGTAATCAAGCAATTCAAGTTCGGTGAGCAGACCTTCACCCTGGAAACCGGCCGCATCGCGCGCCAGGCGACCGGTGCCGTGCTGGTCTCCA CCGAAGACGTCAGCGTGCTGGTCACCGTGGTCGGTGCCAAGCAGCCCGCCGTCGGCAAGGACTTCTTCCCGCTGTCCGTGCACTACCAGGAGAAGACCTA CGCCGCTGGCCGCATCCCCGGTGGCTACTTCAAGCGTGAAGGCCGTCCTTCCGAGAAGGAAACCCTGACCTCGCGCCTGATCGATCGCCCGATCCGCCCG CTGTTCCCCGAAGGCTTCCTCAACGAAGTCCAGGTGGTCTGCACCGTGGTCAGCACCAACAAGAAGTCCGATCCGGACATCGCCGCCATGATCGGCACCT CCGCCGCCCTGGCCATCTCCGGCATTCCCTTCGCCGGTCCCATCGCCGCTGCGCGCGTGGGCTACCACAGTGAACTGGGCTACCTGCTGAACCCCAGCTA CGAGCAGCTGCAGAGCTCCAGCCTGGACATGGTCGTGGCCGGTACCCGTGACGCCGTGCTGATGGTGGAATCCGAAGCCGACGAGCTGACCGAAGACCAG ATGCTGGGTGGCGTGCTGTTCGCCCACGAAGAATTCCAGGTGGCCATCGAGGCCATCAGCCAGTTCGCCGCCGAAGCCGGCAAGCCGACCTGGAACTGGC AGGCACCCGCCGAGAACACCGCCCTGGTCGAGGCCGTCAAGGCCGAGGTCGGCGAGGCCGTGTCCCGTGCCTACACCATCACCATCAAGCAGGACCGCTA TGCGGCCCTGGGCGCCCTGCGTGACCAGGCCATCGCCAAGCTGGCCGGCGAGAACGGCCAGTACAGCGAAGCCGAGGTCAAGGAGACCTTCGGTCTGCTG GAATACCGCACCGTGCGCCAGAACATCGTCGACGGCAAGCCGCGTATCGACGGCCGCGACACCCGCACCGTTCGCCCGCTGCAGATCGAAGTCGGCACCC TGAAGAAGACCCACGGTTCGGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCACCGCGACCCTGGGTACCGCCCGCGATGCCCAACTGCTGGACAC CCTGGAAGGCGAGCGTCGTGACAGCTTCATGCTGCACTACAACTTCCCGCCCTTCTCGGTCGGCGAGTGCGGCCGCATGGGCAGCCCGGGCCGTCGCGAG ATCGGTCACGGCCGCCTGGCCCGTCGTGGCATCCAGGCCATGCTGCCGACCCAGGAAGCCTTCCCCTACAGCATCCGCGTGGTCTCCGAGATCACCGAGT CCAACGGCTCCAGCTCCATGGCCTCGGTCTGCGGTGCCTCTCTGGCGCTGATGGACGCCGGTGTGCCGGTCAAGGCCCCGGTTGCCGGTATCGCCATGGG TCTGGTCAAGGAAGGCGAGAAGTTCGCCGTCCTGACCGACATCCTGGGTGACGAAGATCACCTGGGCGACATGGACTTCAAGGTGGCCGGTACCGCCAAG GGCGTTACCGCCCTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAGATCGCCCTGGAGCAGGCGCTGGAAGCGCGTCTGAATATCC TGGGTCAGATGAACCAGGTGATCTCCGAGTCCCGCGCCGAGCTGTCGGAAAACGCCCCGACCATGCTGGCGATGAAGATCGACCAGGACAAGATCCGCGA CGTGATCGGCAAGGGTGGCGCCACCATCCGCGGTATCTGCGAAGAGACCAAGGCTTCGATCGATATCGAAGACGACGGCACCATCAAGATCTACGGCGAG ACCCGCGAAGCGGCTGAAGCGGCCAAGCAGCGCGTTCTGGGCATCACTGCCGAGGCCGAGATCGGCAAGATCTACGTCGGCAAGGTGGAGCGCATCGTCG ACTTCGGCGCCTTCGTCAACATCCTGCCGGGCAAGGACGGTCTGGTGCACATCTCGCAGATCAGCGATCAGCGCATCGAGAAGGTCACCGACGTCCTCAA GGAAGGTCAGGAAGTGAAGGTGCTGGTGCTGGACGTGGACAACCGCGGTCGCATCAAGCTGTCGATCAAGGACGTGGCGGCGGCGGAAGCCTCCGGCGTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GACGACCCTGCATGAAAAAAACCCGGCCTCGGCCGGGTTTTTTCGTTTCGGGTACGGGTGCCGGGGACCTTTGTATCGCGGCCATGCCGGTGCGCCGTAG CGACTGTTTCTACAGGGGGTGATGCAACTGTCCTATCGCTATAGGAATACACCCGTAGCGGGGAAAACGGCGCAGCCTTTTCCACTTCAGACCTCGTGGC AAGGGCGCGCCCTCACCCCCAACCCTCTCCCGAAGGAGAGGGGGTTATCCGAGCCGGCATTAGCCCCGGCTAGATAGCGATACACCGGCGTGCCTCCCGC TGTAGGAGCGACCCATGGCCGCGATTGGCCCAGGCATTACGCCTTCTCGCGAATCCATTCGATGAAGCTGCGCACCTTGGGCACCTCGGCCATCTGTTCC GGATAGGCCAGCCAGTAGGCGTGGGGGCTGGCCAGGCGGTGGGGCCAGGCGAGCACCAGGCGGCCGGAGGCCAGCTCTTCGGCCACCAGGAATTCCGGCA
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Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKQFKFGEQTFTLETGRIARQATGAVLVSTEDVSVLVTVVGAKQPAVGKDFFPLSVHYQEKTYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRP LFPEGFLNEVQVVCTVVSTNKKSDPDIAAMIGTSAALAISGIPFAGPIAAARVGYHSELGYLLNPSYEQLQSSSLDMVVAGTRDAVLMVESEADELTEDQ MLGGVLFAHEEFQVAIEAISQFAAEAGKPTWNWQAPAENTALVEAVKAEVGEAVSRAYTITIKQDRYAALGALRDQAIAKLAGENGQYSEAEVKETFGLL EYRTVRQNIVDGKPRIDGRDTRTVRPLQIEVGTLKKTHGSALFTRGETQALVTATLGTARDAQLLDTLEGERRDSFMLHYNFPPFSVGECGRMGSPGRRE IGHGRLARRGIQAMLPTQEAFPYSIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTAK GVTALQMDIKINGITEEIMEIALEQALEARLNILGQMNQVISESRAELSENAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGTIKIYGE TREAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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