Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TGTGCGCGGCATTCAGCTCGCCATTGGCCTGCAGGGTGCTGAGCATCTGCCCCTGGGGGAACTGGCGCATTTTCAGCACGTATTCGATGGCCTCGCCTTC GCCACCGATCTGCGGCGCTTCGACGCTGCCGGTAACGGGCAATACCTCCAGGTACAGGCCGTCGGTCAGGCGCTGGTTCAGGCGCAACTCTTCGTTACAG AAATGCTGGCGCTGGCCCAGTTCGGTGAAGTCGAGAAAGCCGAAGTTCATCGGCTTCTTGATCTTGTAGGCGTACTCGCCGGTCAGCAGCACCCAGGAGA TATGCGTCTCGATGAGCTGGAACCCATCCACGGGGTGAGGGTACAGGGCAGGGTTCTGCAGCGCAGTGATAAGGGCTTGGCTCACGGGAAATCCTTCCGG GGGCAGGGAATTCGAATGCGCCATTATGGTCAATGGTGCCGTCCCTGCCTACCGCTGGGCCGTCTGCCCAGCCTTTATAAAGTGCGTATAATCCGCCGCC
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DNA Sequence for Gene |
>N805_RS26080
ATGACCCGAACCCGAAATCCCCGTACCCCTCAGAAACGCCCGACCGGCCGCTCCCGCGCCTGGCTGGGCTGGGCTTTGAAGCTCAGCCTGGTAGGCCTGG TGATCGTTGCCGGCTTCGCGGTTTACCTCGATGCCGTTGTGCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTGTATGCCCGGCCACT GGAGCTGTTCACTGGTCAGAAACTGAGCAAGAATGACTTCCTTACCGAACTCGACGCGCTCGGCTACCGGCGTGAAAGCGCGGCCAACGGCCCGGGTGCG GCGGCCGTCAACGGCAACACCGTCGACCTCAATACCCGTGGCTTCCAGTTCTACGAGGGCATGGAGCCGGCGCAGTTTGTGCGCGTGCGCTTCTCCGGCG ATTACGTGGCGGGCCTTTCTGCTGCCAACGGCAAGGCGCTCGACGTGGTGCGGCTGGAGCCGCTGATGATCGGCGGCATCTACCCGAAGAACCTCGAAGA CCGCATCCTGATCAAGATCGACCAGGTGCCCAAATACCTGCTCGAAACCCTGGTGGCGACCGAAGACCGCGACTTCTACAGCCACTACGGCGTGTCGCCC AAGTCCATCGCCCGGGCAATGTGGGTCAACACCTCGTCCGGTTCGATGCGCCAGGGGGGGAGTACCCTGACCCAGCAGCTGGTGAAGAACTTCTACCTCA GCAGCGAGCGCAGCCTCAGCCGCAAGCTGACCGAGGCGATGATGGCCATGCTGCTTGAGCTGCACTACGACAAGCGCGAGATTCTCGAGGCCTACCTCAA CGAAGTGTTCGTCGGTCAGGATGGCCAGCGCGCCGTTCACGGCTTCGGCCTGGCCAGCCAGTTCTTCTTCAGCCAGCCGCTTTCGGAGCTGAAGCTGCAT CAGATCGCCTTGCTGGTGGGCATGGTCAAGGGGCCGTCCTACTACAACCCGCGGCGTTACCCTGACCGCGCCCTGGCCCGCCGCAACCTGGTGCTTGACC TGGTGGCCGAGCAGGGCGTGGCGAGCCAGGCGGAAGTCGATGCGGCTAAGAAGATGCCGTTGGGCGTGACCAAGCGCGGCAGCCTGGCCGACAGCTCGTT CCCGGCCTTCCTCGACCTGGTCAAGCGTCAGCTGCGCCAGGACTACCGCGACGAAGACTTGACCGAAGAAGGCCTGCGTATTTTCACCAGCTTCGACCCG ATCCTGCAGATGAAGGCCGAAACCTCGATGAGCGAGACCTTCAAGCGCCTGGCAGGGCGCAAGGGTGCTGACGAGGTGGAATCGGCAATGGTCGTGACCA ACCCGGAAACCGGTGAGGTACAGGCGCTGATCGGTAGCCGCCAGGCAGGCTTCGCCGGTTTCAACCGGGCCATCGACGCGGTGCGGCCGATCGGCTCGCT GGTCAAGCCGTCGGTGTACCTGACTGCGCTGGAGCAGCCGAGCAAGTACACCCTGACCACCTGGGTGCAGGATGAGCCATTTTCGGTCAAGGGTGCCGAT GGTCAGGTCTGGCGCCCACAAAACTACGACCGTCGACCGCATGGCACCATCTACCTGTATCAGGGGCTTGCCAACTCGTACAACCTGTCTACCGCCAAGC TTGGCCTGGAAGTGGGCGTGCCCAATGTGATCAAGACCATTGGCCGGCTGGGGGTGAATGTCGACTGGCCAGCCTTCCCGGCCATGTTGCTGGGTGCTGG CGGCATGTCGCCGATGCAGGTTGCAACCATGTACCAGACCATCGCCAACGGCGGTTTCAACACCCCGATGCGTGGTATCCGCAGTGTGCTGACTGCCGAG GGCGAACCGCTCAAGCGCTACCCGTTCCAGATCCAGCAAACCTTCGACCCGGGGGCCATCTACCTGGTGCAAAACGCCATGCAGCGGGTCATGCGCGAAG GTACCGGGCGCTCGGTGTACAACACCTTGCCGCGCTCGCTGACCCTGGCGGGCAAGACCGGTACCAGTAACGACTCGCGCGACAGCTGGTTCTCCGGCTT CAGCCAGGACCTGCTGGCCGTGGTGTGGATGGGCCGTGACGATAACGGCAAAACACCCTTCACCGGTGCCACCGGTGCCCTGCAGGTGTGGACCAGCTTC ATGAAGAAGGCCGACCCGCTGCCGCTGGACATGCCGCAGCCGGACAACGTGGTGCAGGCCTGGATCGACCCTTACAGTGGCCATGGGTCTGATGGCAGCT GTCCGGGAGCGGTGCAGATGCCGTATATTCGCGGGAGTGAACCGCCCGCCGGCGCGACCTGTGGCGGCGAGCAGAATCCTGCAGAATCAGTCATGGACTG GGTCAAAGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCACAGGCTGCATTGATGAGGTGTGACGTGAACAAGTGGCTGTTTCCTGCCGTGACGGCGTTGGCTGTGCTCCAGGGGTGCTCCAGCGTCCCGCGCGGCA ATATACCGGTGGTCGATTCGAGCACCCGCGTGTCCAACAGCGAGCGCGTGACGGCTACCCGCTCGGCGGGTGGCTATAACACGGGCACCGCGCAAGCGCA GACGCTGCCTGAAGACTCCGGCGTCACCGTGATGATTCCGCAGGGCGCTGGCGCTTCAGGCATCCAGACGTTCCCGGCTGCCAACGGCGCAGCGCCGATC AGCACCTCGCCAATCACGCCGGGCCCGATTACCCCAGGCCCGGCCAGTTCGGCGCCGATGACCACAAACCCGAACCCGATCGCCGACGAGCCGTTCGACA TCGCGGCCATGAGCAGCACCCCACCAAGTACCAGTGCGCCAACGGGTATTCCGCGCAGCAACACCGCTGCGGGTGGTCTGTCGGCCGACGAGCAGCTGGA
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Amino Acid Sequence |
>penicillin-binding protein 1B
MTRTRNPRTPQKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKNDFLTELDALGYRRESAANGPGA AAVNGNTVDLNTRGFQFYEGMEPAQFVRVRFSGDYVAGLSAANGKALDVVRLEPLMIGGIYPKNLEDRILIKIDQVPKYLLETLVATEDRDFYSHYGVSP KSIARAMWVNTSSGSMRQGGSTLTQQLVKNFYLSSERSLSRKLTEAMMAMLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QIALLVGMVKGPSYYNPRRYPDRALARRNLVLDLVAEQGVASQAEVDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAETSMSETFKRLAGRKGADEVESAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYTLTTWVQDEPFSVKGAD GQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNVIKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MKKADPLPLDMPQPDNVVQAWIDPYSGHGSDGSCPGAVQMPYIRGSEPPAGATCGGEQNPAESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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