Pseudomonas putida S13.1.2, N805_RS23425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCTGGCCACCGATGGCGACCGCGATGCAGTGTTCAACGTCTACGAATCGCTACTGATAGCGCCGCCCAGCGATGCAGGGGTGATCGTCAGCCTGCTGG ACGACCCCAAGGTCCAGGCTCAGGGCTTCGTACGCGAAATCACCCCCACGGTGTCGGCGCAAAGCGGCACGGTGCAGGTCAAGGTCGGCCTGAAGGACGT GCCAGCAGGGATGCAACTGGGTGCACCAGTGACCGCCACCACCAATGCCCAGGGCCGGCCCAGCATCGAACTGCCGTGGTCGGCGCTGACCAAGGCCCTG CATGAGCCCGCTGTGTGGGTGGTGGGCGAGGGCGACAAGGTGGAATTGCGCAAAGTGGAAGTCAGCCGTTACCTCACCGGCAAGATTGTGGTCGCCAGCG GCCTGAAGGGCGGCGAAACCGTGGTGGTCACTGGCGGGCAGTTGCTGCACCCCGGCATGCAAGTGCAGAAGGTCGACGCCAAGGCCCAAGGGGGTGAGCT
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| DNA Sequence for Gene |
>N805_RS23425
ATGAAACGCCTGCTGCTGATGCTGTCGGCCGGCGTATTGCTGGCTGGCTGCAGTAGCGAAGAAGAAGCACCAGAGCCGATTCGGCCGGTGCTGTCGGTCA AGGTCGAACCCCAGGTGCAGTCGCAACTGGGCCGCTTCGCCGGCAGTATCCAGGCGCGTTTCGAAAGTACCCTGGGCTTTCGTGTTTCCGGGCGCATTGC CCGGCGTTGGCTGGATGTGGGCGCCCAGGTGAAGCCGGGCGACACCTTGGCCACTCTCGACCCGACCGACCAGCAGAACCAGCTGCGCGCCGCCGAAGGC GACCTGGCCAAGGTTCAGGCACAGTGGATAAACGCCCAGGCCGATGCCCGTCGCCAGCAACAGCTGTATGACCGTGGCGTTGGCGCCCAGGCCCAGCTGG ATATCGCCCAGACCAACCTGAAAACCACCAGCGCGGCGCTGGAGCAGGCGCGCTCTGCGCTCAGCCAGGCACGTGACCAGCTTGACTACAGCACCCTGCG CTCCGACCACGCCGCCGTGATTACCGCCTGGCAGGCCGAAGCCGGGCAAACCGTAACGGCCGGGCAAGCCGTGGTGACACTGGCCCGACCGGATGTGAAG GAAGCGGTCATCGACTTGCCAATCGGCCTGGCCGAGCAGTTGAGCAAAAGCCTGACCTTCACCGTGGCCTCGCAACTGGACCCGACCATCAGCACCACGG CAAGCCTGCGCGAACTGGAGCCCCAGGCCGATGCCACCACCCGTACCCGCCGCGCCCGCCTGACCCTGGCCAGCACGCCGGCGGCCTTTCACCTCGGCAC CGCCATCAGTGTGACCCTCAGCTCGCAAATATCCCCGCGCAGCGAATTGCCCTTGAGTGCCTTGCTCGAGCGCGACGGCAAGACCCAGGTGTGGGTGATC GATACGCAGCAGAAGACCGTGGCCACCCGCGACGTGACGCTGATCGGCCGCACCGCTGACAGCGTCGTGGTGAGCGCCGGCGTGCAGCCCGGTGAGCGCG TGGTCACCGCGGGCGTCAACAGCCTCAAGCCTGGCCAGAAGGTCACCTTCGACGAGGATGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGAAGCTTCAACCTGTCCGACTGGGCACTCAAGCATCAATCGTTCGTCTGGTACCTGATGTTCGTTGGCTTGTTGATGGGGATATTCTCCTACTTCAA CCTGGGCCGTGAGGAAGACCCGTCGTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCCGGCGCGACCCAGGACGAAACCCTGTACCAGGTCACC GACCGCATCGAGAAGAAGCTCGAAGAACTCGACTCGCTCGACTACACCAAAAGCTACACCCGCCCCGGTGAATCCACGGTCTACGTGTACCTGCGCGACA CCACCAAGGCCAAGGACATCCCGGATATCTGGTACCAGGTGCGCAAGAAGATCCAGGACATTCGTGGCGAATTCCCGGCGGGCATCCAGGGGCCGGGCTT CAACGACGAATTCGGTGATGTATTCGGCTCCATCTATGCCTTTACCGCCGACGGCCTGACCTTGCGCCAGCTGCGTGACTACGTGGAACAGGCGCGGGCC
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| Amino Acid Sequence |
>RND transporter
MKRLLLMLSAGVLLAGCSSEEEAPEPIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEG DLAKVQAQWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSALSQARDQLDYSTLRSDHAAVITAWQAEAGQTVTAGQAVVTLARPDVK EAVIDLPIGLAEQLSKSLTFTVASQLDPTISTTASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSQISPRSELPLSALLERDGKTQVWVI DTQQKTVATRDVTLIGRTADSVVVSAGVQPGERVVTAGVNSLKPGQKVTFDEDAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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