Pseudomonas putida S13.1.2, N805_RS20180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGATCCAGCAGATCGCCGACCCGCGCACGCTGTACGAAGAACCCTGCAATACCTTCGTCGCCAACTTTATCGGTGAGAACAACCGTATCAACGGCACC CTGCTTGCCAGCGACGGCAAGCGCTGCCAGGTGCAGTTGCCGCGCGGCGAACGGGTCGAGGCGCTGGCGGTGAACGTCGGCCAGGCCGGCGAGCCGGTAA CCCTGTCTATCCGCCCGGAACGTGTGCGCCTGAATGGCCACAGCGAAAGCTGCGTCAACCGCTTCTCTGGCCGGGTGGCCGAATTCATTTACCTGGGCGA CCACGTGCGGGTGCGCCTGGAAGTTTGCGGCAAGGCCGATTTCTTCGTGAAACAGCCGATTGCCGAGCTCGACCCGGCCCTGGCCGTGGGCGATGTGGTA CCGCTGGGCTGGGAGGTGGAGCACGCCCGCGCGCTCGATCCGATTGCCGAAGCCCATTGATGGATTGCTTCACCAACCCTGTACTGTGGAGAGAATAAGA
|
|
| DNA Sequence for Gene |
>N805_RS20180
ATGCGCAAGCAGTTGAAACTGACCGCCCTGGCCCTGGGGCTGTTCGCCGCTGGCCAGGCCATGGCCGCAGACCTCACCGTGATCTCGTTCGGGGGCGCCA ACAAGGCTGCCCAGGTAAAGGCGTTCTACGAACCATGGGAGAAGGCGGGCAATGGCAAGATCGTCGCCGGTGAGTACAACGGCGAAATGGCCAAGGTGAA GGCGATGGTCGACACCAAGAGCGTCTCGTGGAACCTGGTAGAGGTTGAGTCGCCAGAGCTGGCGCGCGGGTGCGATGAGGGCATGTTCGAAGAGCTCGAC CCAGCCCTGTTCGGCAGCGAGGCCGATTACGTGCCGGGTGCCATCCAGCCTTGCGGCGTGGGCTTCTTCGTCTGGTCCACGGTCATGGCCTACAACGCCG ACAAGCTCAAGACTGCACCTACCAGCTGGGCCGATTTCTGGGACACCAAGCAGTTCCCGGGCAAGCGTGGCCTGCGCAAAGGTGCCAAGTACACGATGGA ATTCGCACTGATGGCCGATGGCGTTGCGCCCAAGGACGTCTACAAAGTGCTGGCAACCAAAGAAGGTCAGGACCGCGCCTTCAAGAAACTCGATGAGCTC AAGCCCAGTATCCAGTGGTGGGAAGCGGGTGCACAGCCGCCACAGTTCCTGGCCTCTGGCGACGTGGTTATGAGTTCTGCCTACAACGGCCGTATTGCCG CTGTGCAGAAAGAGAGCAACCTCAAGGTGGTGTGGAACGGCGGTATCTACGACTTTGACGCCTGGGCGATCCCTAAAGGTGCCAAGAACGTCGAAGAGGC GAAGAAGTTCATCGCCTACAGCGTCAAGCCCGAGCAGCAGAAGATCTACTCCGAGAACATCGCCTATGGCCCGGCCAACGCCAAGGCCGTGAGCCTGCTG TCGGAGGAGGTGAAGAAGGACATGCCGACCACCCCTGAGAACATCGCCAACCAGGTGCAGATCGACGTGGCCTTCTGGGCTGACAACAGCGAGCAGCTGG AGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAAACCGCAAAGCAGGGCCGCCATGCGGCCCATCGCCGGCAAGCCAGCTCCCACAGGGAGCACGTAATCCCGCAAGCCTGTGCAGTACCTGTAAGGCCCG GGGATCAGAAGTCTCGAAGCCAGTGCAGTGGCTGTAAGGAACAGGGATCAGAAGTCTCGAAGCCAGTGCAATGGCTGTAAGGGACAGGGATCAGAAATCT CGAAGCCGGTGCAGTACCTGTGGGAGCTGGCTTGCCGGCGATGGGCTGCACAGCAGCCCCATTTTCAGTTCGTATCGCGGAGTTCGCCATGGCCATTGCA GTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTGAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCTGG CGCTGTTTCTTCTGCTGGTGTTTCTGGTGCCGATCGCGGCGCTGCTGTACAAGAGCGTCGGCAACCCGGAAGTGGTCGCCGGCCTCCCGCGCACGGTCGA
|
|
| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MRKQLKLTALALGLFAAGQAMAADLTVISFGGANKAAQVKAFYEPWEKAGNGKIVAGEYNGEMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELD PALFGSEADYVPGAIQPCGVGFFVWSTVMAYNADKLKTAPTSWADFWDTKQFPGKRGLRKGAKYTMEFALMADGVAPKDVYKVLATKEGQDRAFKKLDEL KPSIQWWEAGAQPPQFLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGAKNVEEAKKFIAYSVKPEQQKIYSENIAYGPANAKAVSLL SEEVKKDMPTTPENIANQVQIDVAFWADNSEQLEQRFNAWAAKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|