Pseudomonas putida S13.1.2, N805_RS13505
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGCAATCGCCCCTTTGCTGGTTCGGCGGCTACCACGGCCTGCCGACCAAGGCCTTCATCGGCAAGTACTACCTCAGTGGCGACACCGTCGAGCTTAAC GCTGATGGCAGCATCAGTTTCGTTGGCCGCAGCGATGACGTGATTACCACGTCCGGGTATCGCGTGGGGCCGTTCGACGTCGAGAGCGCGTTGATCGAGC ACCCCGCGGTGGTCGAGGCCGCAGTCATCGGCAAGCCGGACCCGGAACGTACCGAACTGATCAAGGCGTTCGTGGTGCTGGCCCAAGGCGTCGACGGGTG TGCCGAGCTTGAAGAAACGCTGCGTCAGCATGTACGCCAGCGCCTGTATGCACATGCCTACCCCCGCGAAATCGAATTCGTCAGCGAGCTGCCCAAGACC CCGAGCGGCAAGCTGCAACGCTTCATCCTGCGCAACCAGGAAGTCGCCAAACAACAAGCGCAACAGGCCACCCCTGCCAGCGTCTGAAAGGAAACCGATC
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| DNA Sequence for Gene |
>N805_RS13505
ATGCTCATAGCCAATAAACACTTCATTGTCAGCGGCGCCGCCTCCGGGTTGGGTGCGGCCACGGCGCAGATGCTGGTCGAGGCCGGCGCCAAGGTCATGC TGGTCGACCTCAATGCCCAGGCCGTCGAGGCCAAGGCCCGTGAGCTCGGTGACAACGCCCGCTTCGCCGTGGCTGACATCAGCGACGAGCAGGCTGCCCA GGCGGCCGTCGATGCAGCCGTCAGCGCCTTTGGCAGCTTGCAAGGGCTGGTCAATTGCGCGGGCATCGTTGGTGCCGAGAAGGTGCTGGGCAAGCAGGGC CCGCATGGCCTGGCCAGCTTCGCCAAGGTCATCAACGTCAACCTGGTCGGCAGCTTCAATTTGCTGCGCCTGACCGCTGCAGCCATGGCCGAAGGGCCTG CCGATGAGGCGGGCGAGCGTGGCGTGATCATCAACACCGCCTCCATCGCTGCCTATGACGGCCAGATCGGTCAGGCTGCCTACGCTGCCTCCAAGGGCGC CATCGCCAGCCTGACCTTGCCGGCCGCGCGCGAACTGGCACGCTTCGGCATCCGCGTAATGACCATTGCCCCGGGCATCTTCGAAACGCCGATGATGGCT GGCATGACCGAGGAAGTGCGTGCTTCGCTGGCTGCCGGCGTGCCGTTCCCGCCACGTTTGGGCCGCCCGCAGGAATACGCTGCGCTGGCCCGTCACATTA TCGAGAACAGCATGCTCAACGGCGAGGTGATCCGCCTCGACGGTGCACTGCGCATGGCTGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGAGCGAACATGACCCTCGCCAATGATCCGATCGTAATCGTCAGCGCCGTGCGCACGCCCATGGGCGGCCTGCAGGGCGACCTGAAAAGCCTGACCGC GCCACAACTGGGTAGCGCGGCCATTCGTGGTGCCGTGGAACGTGCCGGCATCGATGCTGCCAGTGTCGAGCAAGTGCTGTTCGGTTGCGTACTGCCGGCC GGTCTGGGCCAGGCGCCGGCACGCCAGGCGGCGCTGGGGGCCGGGCTGGACAAGCACACCACCTGCACCACCCTGAACAAGATGTGCGGCTCGGGCATGC AGGCCGCGATCATGGCCCATGACCTGCTGCTGGCCGGCACCGCAGACGTGGTGGTGGCGGGTGGTATGGAGAGCATGACCAATGCCCCGTACCTGCTGGA CAAAGCCCGTGGCGGCTACCGCATGGGCCACGGCAAGATCATCGACCACATGTTCATGGACGGCCTGGAAGACGCCTATGACAAAGGCCGTCTGATGGGC
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| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MLIANKHFIVSGAASGLGAATAQMLVEAGAKVMLVDLNAQAVEAKARELGDNARFAVADISDEQAAQAAVDAAVSAFGSLQGLVNCAGIVGAEKVLGKQG PHGLASFAKVINVNLVGSFNLLRLTAAAMAEGPADEAGERGVIINTASIAAYDGQIGQAAYAASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMA GMTEEVRASLAAGVPFPPRLGRPQEYAALARHIIENSMLNGEVIRLDGALRMAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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