Pseudomonas putida S13.1.2, N805_RS12465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 338 | 523 | 1.5E-63 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 355 | 522 | 1.7E-52 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 368 | 519 | 1.8E-40 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 369 | 521 | 4.25912E-58 |
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 40 | 270 | 7.5E-16 |
| CDD | cd18774 | PDC2_HK_sensor | - | - | 190 | 273 | 2.02399E-13 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 373 | 521 | 1.88E-43 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 363 | 523 | 1.3E-47 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 357 | 523 | 1.8E-60 |
| SUPERFAMILY | SSF103190 | Sensory domain-like | IPR029151 | Periplasmic sensor-like domain superfamily | 189 | 269 | 1.29E-10 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 158 | 284 | 7.8E-13 |
| SUPERFAMILY | SSF103190 | Sensory domain-like | IPR029151 | Periplasmic sensor-like domain superfamily | 85 | 182 | 8.24E-8 |
| CDD | cd18773 | PDC1_HK_sensor | - | - | 66 | 184 | 6.13E-10 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 364 | 521 | 1.6E-42 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.