Pseudomonas putida S13.1.2, N805_RS11925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGCCGACCGTTTACGTGCGCTGGACTACGAAGTGACCCACACATTGATCCGCTCGCCGATCGACGGCATGGTCCAGGGCCTGAGCATCGCCACCGTC GGCGGCATCATCCAGCCTGGCGCCAAGATCATGGAGGTGGTGCCGCTCGACCAACCGCTGCAGGTGGACGCGATGATCCCGGTGCAGGCCATCGACAAGA TGGTGCCGGGGCTGGCCGTGGACATCGCCTTCCCGGCCTTCAACCACGCGCAGACGCCGAACATCCCGGGGCGGGTGAAGACCATTTCCGCCGACCGCCT GCTCGACGAAGAAAGCAAACAGCCGTTCTACCTGGCCCAGGTGGAAGTGACACCGGCCGGCATGGGCCTGCTGGGCAGCAATCACATTCGCCCCGGCATG CCCGCCACCGTCACCATCAAGACCGGCGAGCGCAACCTGCTCAGCTACCTGCTAAAACCCATGCTCGAACGCGTCGACGCCGCGTTCAAGGAGCAATGAC
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| DNA Sequence for Gene |
>N805_RS11925
ATGAAACGCTCGTGCCTGATGTTGTGCCTGCTGGGGGTGGCCGTACAGGCCAGTGGCATGGACCTGAAGCAAGCCTGGGACCTGTTGCAGTACCAAGGCC CGATCTACCGCGCTGCGGTGCACGAAAAAGAAGCCGGCAGCGAAAACCGCGCCATTGGCGAGGCCGGCCTGCTGCCGCAGATCAACGCAGCGGCGTACTT CAACAGGGTCAATGGCAGCCAGCGCCAGAATGGCCAGGACAACGACCTGAACTATGACTCCAAGGGCGCCAATGTGCGCCTGCGCCAACCGCTGTTCAAC AAGCAGAAAATGGCCGAGTACCACCAGGGCCAGCAACGGGCCGACTACAGCGTGGCGGTGTTCGACGCCAAGAGCCAGGACGCTGCGGTACGCCTGGCCG ACGCCTACTTCGACGTGCTGCTGGCCAGCGAAACCATCACCTTGGCCAAGGCCAAGCTGAACGCCTTCGAAGAGCAGCAGGCTTCGGCAAAACGGCGCAA GGAGCTGGGCGCCGGTACCATCACCGATGTCGATGAGTCGGTGGCCCGGCGCGACCTGGCCGAGGCCGACCTGATCGAGGCCCAGGACAACCTGGTCAAT GCCCGCCGCAAGCTGGAGGAATACATCGGTGAAACCCCGCAGGCGCTGACCACCTTGCAGCCGGGCTTCAGCACGCCACCGCTGATGCCGGGCAACCTGC AGGACTGGCTGGTCAAAGCCCAGGCTGACAGCCCGCTGATTCACGCGCGCCGGCACAACTATGAGCTGGCCGAAGAGGAAGTGAAACGTGCCCGCGCCGG GCACTGGCCAACACTGGATTTCGTGGCGGGCTACAACGCCGGCAGCAGCCAGTCGATTTCCGAGCTTAACCAGCGCAACCACTACAGCTCGATCGGCCTG GAGCTGAACATTCCGCTGTACAGCGGCGGCAGCACCAGCGCCCTGACCCGCCAGGCCAGCGCCAACAGTTCCAAGGCCCTGGATGAGCTGGATGCTACCC GTCAGGAGGTGATTTCCGGCACCACCCGCGAGTACCGCGGCGTGCAGAGCGGCGCCTTGCGCATTCATGCGCTGGAAAAGGCCGTGGCCTCCAACGAGCG CTCGCTGACCTCGACCCGCAAGGGGTTCAAGGAAGGCGGCACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAACTGCTGTACGACGCCCGCCATGAT CTGTTCGAGGCGAAGCTTAACTACCTGATGTCGCGGCTGCGCCTGGCCTCGTCAGTGGGTAGCCTGGGGGATGATGATATCCAGCAGGTCAACGATTACC TGGGCCCGGAGCTGATGGTGAGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCGCAAGGCTCGGCAACCGATGAGGAGCGGCGCTTGGCTTGCGGGGATGCCTGATCGCTGTATATGATAAGTATTATCGTTTGCGATACTTATCCATA GCGGCCCTCCTCCATGCCTTCACCTTCCGACTCCAGCTTCTGCGATGTGGCCGCGCTCTACCGCCAGCAACACAACTGGCTGAAAAACTGGCTGCGCCAC CGGCTCAATTGCTCGCACAGTGCCGCGGACCTGGCGCAGGACACGTTCTTGCGGCTGCTGGCAAAAGACCAGGTACCCCATTTGCACGCCCCACGTACCT TTCTTGCAAAGGTTGCGCAAAGCGTCTTGTCCAACCACTACCGCCGGCAAAAACTCGAACGTGTCTACCTCGCAGCCTTGGCGGCCATGCCTGAGCAGTA CGTGCCCAGCCTGGAAACCCAGGCGATCCTGTTGGAAACCCTGATTTCCCTGGATGCGGCTATCGAGGGCCTGGATCAACCGGTACGCGCTGCATTTCTG
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| Amino Acid Sequence |
>channel protein TolC
MKRSCLMLCLLGVAVQASGMDLKQAWDLLQYQGPIYRAAVHEKEAGSENRAIGEAGLLPQINAAAYFNRVNGSQRQNGQDNDLNYDSKGANVRLRQPLFN KQKMAEYHQGQQRADYSVAVFDAKSQDAAVRLADAYFDVLLASETITLAKAKLNAFEEQQASAKRRKELGAGTITDVDESVARRDLAEADLIEAQDNLVN ARRKLEEYIGETPQALTTLQPGFSTPPLMPGNLQDWLVKAQADSPLIHARRHNYELAEEEVKRARAGHWPTLDFVAGYNAGSSQSISELNQRNHYSSIGL ELNIPLYSGGSTSALTRQASANSSKALDELDATRQEVISGTTREYRGVQSGALRIHALEKAVASNERSLTSTRKGFKEGGTSTNSDVLNAEELLYDARHD LFEAKLNYLMSRLRLASSVGSLGDDDIQQVNDYLGPELMVSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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