Pseudomonas putida S13.1.2, N805_RS11095

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00674
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00674
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001365
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc L-lysine biosynthesis VI InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc L-lysine biosynthesis II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc L-lysine biosynthesis III InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 103 119 7.0E-14
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 3 280 9.0E-54
NCBIfam TIGR00674 JCVI: 4-hydroxy-tetrahydrodipicolinate synthase IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 8 283 5.4E-69
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 285 1.5E-79
SMART SM01130 DHDPS_2 IPR002220 DapA-like 3 286 2.9E-93
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 3 283 1.1E-56
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 128 145 7.0E-14
Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 3 285 43.172821
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 36 57 7.0E-14
CDD cd00950 DHDPS IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 4 283 3.67657E-119
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 285 4.7E-80
SUPERFAMILY SSF51569 Aldolase - - 1 283 1.15E-78

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.