Pseudomonas putida S13.1.2, N805_RS09525
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGTGCATGGCAGGCCTCGGCAAGCTGCCGGTAGCCGTCGATGCAGGCATCGTCGGTGGCCATGA GCACATGCGAGGTGTAGCGGGCGCTGTCATGCACACCCGCAACCTGCAGCACGATCAAGCCGACGCCACCGGCTGCGCGGTCGCGCTGGTAGGCAATCAG CTTGTCGTTGACCAGGTTGTCGGTGGGCAGGCAGGTGTCGTGGCCGGTGGACATGATGCGGTTCTTCAAGCGCTTGCCGCGGATCTGCAAAGCTTCGAAC AGGTGAGGGAAGGCGGTTTGCATACAGGCGGCTCCGGTGCGGTGTTGTTCTTGTTTTGTTTATGAAAGTGTAGCGTCAGTAAAAAATCAACTTGTTTTTT TACTATGGCGCGACTAGGTTCTCATCACCCTCAGCGCGAGGGCGTGACCTCACAACAACAAGAAAACGGGCCCTTCGGGCACCGGCAGGAGGAAACTTCG
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| DNA Sequence for Gene |
>N805_RS09525
ATGCAGGTATTACCACGTGTTCCTGGCCTCTGCGCAACGTTGCTGGCCATTGGCCTGGGCAGTGCGCAAGCCGCGCCGCAGATGGTCGTGGTGGGCTATG GCGGCGCCGGCCAGAAGGCCCAGGACGAGGCAATCTTCAAGCCCTTCAGTGCCCAGGATGGCAGCAAGCTGATCCAGAGCGAATACAACGGCGAGATGGC GCGGATCCAGGTGATGGCCGACACCGGCAACGTCGACTGGGACGTGGTACAGATCGAGGGGCCGGACTTGATGCGCGGCTGTGATGAGGGTGTCTACGAA CACCTCGACTGGCAGCGCCTGGGCCACGGCGCCGAGCTGATACCCGACGCGGCGCAGGACTGCGGCTCGGCTGCGCTGGTGTGGAGCGTGGCCATCGCTT ACGACCGCAACAAGTTGGCGCAGGCACCGGCCTCGTGGGCCGACTTCTGGGACGTGAACAAGTACCCGGGCAAGCGCGGCTTGCGCAAGCGTGCGGTGTA TAACCTGGAGTTCGCCCTGCTTGCCGATGGGGTCAAGGTGGAGGACGTCTACAAGGTGCTGTCGACGCCGGCCGGGGTTGAACGTGCTTTCGCCAAGCTC AGCGAACTCAAACCCTATGTCCAGTGGTGGGACGCCGGTGCCCAACCTGCACAGTGGCTGGCTGCGGGTGATGTGGTAATGACTTCGACCTACAGCGGGC GCATCGCCGTGGCGGCGCAGCAGGGCAGCCCGCTGGCCGTGGTATGGCCTGGAAGCCTGTATGGCATGGACTACTGGGCCATCATCAAAGGCTCGCGGCA TGTCGACCAGGCCAAGCGGCTGATTGCCTATGCCAACCAGCCGGATACCCAGGTGCGGTATGTACAGCAGATTCCGTATGGGCCGACCAATACCCAGGCC GCTGCCAAACTTGACCCGGCCTTGGCCAGTTGGGTGCCGACTTCGCCGCAGAACCTGCAAGGGGCGCTGGCGATGAATGTGGAATTCTGGGTCGACCATG GCGAAGAGCTGGAACAACGCTTCAATGCCTGGGCGAGCAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTCAGGGCACTTCGTCTAAACATAGGGAGTACATATGTTCTCCTGTAGTTGAGCCCGTACTGCAGGTCAGTAACAGTCACTGTTGTGCAACCCTGGGGG ATAACTGTGCTGGTCCGCTTTTGAGGAATAGCCTTATGCTGTAACGAAATATGTCCAAAAAGCCTGTAGAAGGAAGTCGCAATGCCGCTCAAGGACCTGC TCATCGCCCTGGTGGTGATCGTCGCCTGGGGAGTCAACTTCGTGGTCATCAAGGTAGGCCTCGATGGCTTGCCGCCGATGTTGCTGGGGGCGCTGCGCTT CTTGTTGGTGGCGTTTCCGGCAATCTTGCTGGTCAAGCGGCCGAAACTGCCCTGGCGCTGGTTGATTGCCTACGGCGCGACGATTTCGCTGGGGCAGTTC GCCTTCCTGTTCCAGGCCATGTACAGCGGCATGCCGCCCGGGCTGGCCTCGCTGATCCTGCAGTCGCAGGCGTTCTTCACGCTGGGGTTCGCTGCACTGT
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MQVLPRVPGLCATLLAIGLGSAQAAPQMVVVGYGGAGQKAQDEAIFKPFSAQDGSKLIQSEYNGEMARIQVMADTGNVDWDVVQIEGPDLMRGCDEGVYE HLDWQRLGHGAELIPDAAQDCGSAALVWSVAIAYDRNKLAQAPASWADFWDVNKYPGKRGLRKRAVYNLEFALLADGVKVEDVYKVLSTPAGVERAFAKL SELKPYVQWWDAGAQPAQWLAAGDVVMTSTYSGRIAVAAQQGSPLAVVWPGSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQIPYGPTNTQA AAKLDPALASWVPTSPQNLQGALAMNVEFWVDHGEELEQRFNAWASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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