Pseudomonas putida S13.1.2, N805_RS08980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCGCGCAGGCCAATTGCAGCAGGTGGGCGACGGCCAGGCCCGCGCCACGCTGATCCAGGACGACGGCAGCGCCTACCCACTGCCAGGCAAGCTGCTGT TCTCGGACATCAGCGTCGACCCCACCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCCGGCAGCTACGTGCGCGT GCGCCTGGAACAGGCCGTGCAACCCAAGGGCCTGAGCGTGCCGCAGCGCGCCATTCTGCGCGACAGTGCCGGCGTGCCCAAGGTGCTGGTGGTCGACCAG CAAGCGCGGGTCAGCGATCGCCAGGTGGTACTGGGCAGCGCCCAAGGCGACCGCTGGGTCGTCAGCGAAGGCCTGGCCCCCGGCGAGCGGGTGGTGGTCG AGGGGCTGCAACACGTCAAGGCCGGTGACCAGGTGCAGGTCGACAACGCATCCGGGGCACCGCCCATCGCACAGCATACCGGCCAGTGAGGGCCTGATTC
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| DNA Sequence for Gene |
>N805_RS08980
ATGCCGCAATTCTTCATCGACCGCCCGGTATTCGCCTGGGTGGTCGCGCTGTTCATCCTGCTGGCCGGTACGCTGGCCATCCCGCAGCTGCCGGTAGCCC AGTACCCCAACGTGGCGCCGCCGCAGGTGGAAATCTACGCCGTTTACCCGGGTGCCTCGGCGGCGACCATGGACGAAAGCGTGGTGAGCCTGATCGAGCA GGAACTCAACGGCGCCGACAACCTGCTGTACTTCGAGTCGCAGAGCAGCCTGGGCAGCGCCACCATCACCGCCACCTTTGCCCCGGGTACCAACCCGGAC CTCGCCCAGGTCGACGTGCAGAACCGCCTGAAGGTGGTCGAGTCGCGCCTGCCGCGGCCGGTTACCCAGCAGGGCCTGCAGGTGGAAAAGGTGTCCACCG GTTTCCTGCTGCTGGGCACCCTCACCTCCGAAGACGGCAAGCTCGACGAAACCGCACTGTCGGATATTCTCGCGCGCAACGTGATGGACGAAATCCGCCG CCTGAAGGGTGTCGGCAAGGCTCAGCTGTACGGCTCGGAGCGCGCCATGCGCATCTGGATCGACCCGGGCAAGCTCATCGGCTTCAACCTCACGCCCAAC GACGTGGCCGAGGCCATCGCGGCGCAGAACGCCCAGGTGGCGCCTGGCAGCATTGGCGACCTGCCCAGCCGCGACACCCAGGAAATCACCGCCAACGTAG TGGTCAAGGGCCAGTTGAGTACACCGGAGGAATTCGCCGCCATTGTGCTGCGCGCAAACCTGGATGGTTCCACGGTGACCATCGGTGATGTCGCCCGGGT CGAGATCGGCGCCCAGGAATACCAGTACGGCACGCGCCTGAACGGCAAGCCGGCCACCGCGTTCAGCGTGCAGCTCTCACCGGGTGCCAACGCCATGGAA ACCGCCACCCTGGTACGGGCGAAAATGCAGGACCTGGCGCGGTACTTCCCGGAAGGCGTCAAGTACGACATTCCTTATGACACCTCGCCGTTCGTCAAGG TGTCGATCGAGCAGGTCATCACCACCCTGTTCGAAGCCATGTTGCTGGTGTTCGCGGTGATGTTCCTGTTCCTGCAGAACCTGCGCTACACCCTGATCCC CACCCTGGTGGTGCCGGTGGCGCTGATGGGCACCTTCGCGGTCATGCTGGCCATGGGCTTCTCGGTCAACGTGCTGACCCTGTTCGGCATGGTATTGGCC ATCGGCATCCTGGTCGACGATGCCATCGTGGTGGTGGAAAACGTCGAGCGCATCATGGCCGAGGAAGGCCTGCCGCCCAAAGAAGCAACGCGCAAGGCCA TGGGCCAGATCAGCGGTGCGATCGTCGGCATCACCCTGGTGCTGGTGGCGGTGTTCCTGCCAATGGCCTTCATGCAGGGTTCGGTTGGGGTGATCTACCA GCAGTTCTCGCTGTCGATGGCGGTGTCGATCCTGTTCTCGGCATTCCTGGCCCTCAGCCTCACCCCCGCGCTGTGCGCCACCCTGCTCAAACCGGTGGCC AAGGGTGAGCACCATGAGCGCAAAGGGTTTTTCGGCTGGTTCAACCGCCGCTTCGAAAGCATGAGCAACGGCTATCAGCGCTGGGTGGTACAGGCGCTCA AGCGCAGCGGCCGCTACCTGCTGCTGTACGCGGTGCTGCTGGCGGTGCTGGGCTATGGCTTCAGCCAGTTGCCCACGGCATTCTTGCCCACCGAAGACCA GGGCTACACCATCACCGACATCCAGCTGCCGCCAGGGGCCAGCCGCATGCGCACCGAACAGGTGGCTGCGCAAATCGAGGCACACAACGCCGAAGAACCC GGCGTAGGCAACACTACGATGATCCTCGGCTTCAGCTTCTCCGGTAGCGGGCAAAACGCGGCACTGACCTTCACCACCCTCAAGGACTGGTCCGAGCGCG GTGCCGACGACAGCGCCCAGTCGATTGCCGACCGCGCCAGCGCGGCCTTCTCCCAGCTCAAGGACGCCGTGGCGTTTTCGGTGCTGCCGCCGCCTATCGA CGGCCTGGGCGAGTCGACCGGCTTCGAGTTCCGCCTGCAGGACCGCGGCGGCATGGGCCACGCCGCGCTGATGGCTGCCCGCGATACGCTGCTGGCCAAT GCTGGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCGTCGTTGGCCGAAAGCCCGCAAGTGCAGCTGGAAATCGACCGCCGCCAGGCCAATGCCCTGG GGGTGTCGTTTGCCGACATCGGCTCGGTACTGGACGTGGCGGTGGGCTCCAGCTACGTCAATGACTTCCCTAACCAGGGCCGTATGCAGCGTGTAGTGGT GCAGGCCGAAGGCGACCAGCGCAGCCAGGTCGAAGACCTGCTGAAAATCCACGTGCGCAACAACAGCGGCAAGATGGTGCCACTGGGCGCATTCGTCCAG GCCAAGTGGGTAAGCGGCCCGGTGCAGTTGACCCGCTACAACGGCTACCCGGCGGTGTCGATTTCCGGTGAGCCGTCAGCCGGCCACAGTTCGGGCGAAG CCATGGCCGAAATCGAACGCCTGGTGGCGCAGCTGCCGCCCGGCGCGGGCCTTGAGTGGACAGGCCTGTCGCTGCAAGAGCGCTTGTCCGGCAGCCAGGC ACCGATGCTGATGGCATTGTCGTTGCTGATCGTGTTCCTGTGCCTGGCAGCGCTGTACGAAAGCTGGTCGATCCCGACCGCCGTGCTGCTGGTGGTGCCG CTCGGCATGCTGGGTGCGGTGCTGGCCGTGACCCTGCGGGGCATGCCCAACGACGTGTTCTTCAAGGTTGGCCTGATTACCCTGATCGGCCTGTCGGCAA AGAACGCCATCCTGATCATCGAGTTCGCCAAGCACCTGGTCGACCAGGGCGTGGACGCCGTCGACGCCGCCGTGCAGGCCGCCCGCCTGCGCCTGCGGCC CATCGTGATGACCTCGCTGGCGTTCATCCTCGGCGTGGTACCACTGGCCATCGCCAGCGGCGCCAGCTCGGCCAGCCAGCAGGCCATCGGCACCGGAGTG ATCGGCGGCATGCTCAGCGCCACGTTGGCGGTGGTGTTTGTGCCGGTGTTCTTCGTGGTGGTAATGCGCCTTGCGGGGCGTAGCAAAGCTGCCATCGCTC GTGAAGACGAAGCAGGCGCCAGCCAGGCGGAGCAGCCGCACGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGTCGGTATGTTAATATTGCTGGCATCGGTGGAGGAGCTGAAATGACACAAGCCCGCGATGCCAGCATCAAATGCCAGGTACTGGAACTTGCCAAACAG CATGGCATTACCAGCGAGAAAGACCGTTTCAGTGACCTGGCCACAACGATTACCAGCCTTTCGGGTGATGTCGTTACCCTCGACGATATCGAAAGAATGC TGGTTTCGCTGAAGAAGAAAGGCGTTCTTACCAAACGGCAGATGCTTGAACTGGAAGCACGCTACCTCAGCGAATCGCCTGGACACGATAGTGGGCGAAA AATCAGCGCATGATATTCGATCCGTTCGACGATTTTGAAACCGCAGGCTACCTGCGAAATGCCTTTAAACTGAAAGACCCTGCGCAAATCAAGAAACTTG AGCATGTGGCTTTTGAGTCCAGCCTGGAGGACGCCATTTCCCTCCTGTCCAACTGTCAGCACATCACCTACCAAACCCTGCTTGGCCTGCACCACCTGCT
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| Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MPQFFIDRPVFAWVVALFILLAGTLAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTNPD LAQVDVQNRLKVVESRLPRPVTQQGLQVEKVSTGFLLLGTLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGSERAMRIWIDPGKLIGFNLTPN DVAEAIAAQNAQVAPGSIGDLPSRDTQEITANVVVKGQLSTPEEFAAIVLRANLDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAME TATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVITTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLA IGILVDDAIVVVENVERIMAEEGLPPKEATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVA KGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGRYLLLYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAHNAEEP GVGNTTMILGFSFSGSGQNAALTFTTLKDWSERGADDSAQSIADRASAAFSQLKDAVAFSVLPPPIDGLGESTGFEFRLQDRGGMGHAALMAARDTLLAN AGKSKVLTNVREASLAESPQVQLEIDRRQANALGVSFADIGSVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQVEDLLKIHVRNNSGKMVPLGAFVQ AKWVSGPVQLTRYNGYPAVSISGEPSAGHSSGEAMAEIERLVAQLPPGAGLEWTGLSLQERLSGSQAPMLMALSLLIVFLCLAALYESWSIPTAVLLVVP LGMLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGV IGGMLSATLAVVFVPVFFVVVMRLAGRSKAAIAREDEAGASQAEQPHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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